Detailed information of deep learning profile BP001014.1

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This page shows detailed deep learning-derived predictions and motifs for CREM in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CREM
Model ID: BP001014.1
Cell line/tissue: HepG2
Class: Basic leucine zipper factors (bZIP)
Family: CREB-related factors
JASPAR ID: MA0609.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q03060  
Source: ENCSR903ELW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 -0.00 -0.00 0.04 -0.00 -0.00 0.00 0.00 0.06 0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.07 -0.00 0.00 0.03 -0.00 0.01 0.00 -0.00 0.01 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.01 0.00 -0.00 0.07 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 0.02 0.01 -0.00 -0.00 -0.00 0.06 -0.00 -0.00 0.01 0.01 0.01 -0.00 ]

Frequency matrix

       
A [ 546 518 475 552 515 472 481 486 464 498 505 455 419 436 571 335 215 1869 18 34 35 134 2644 116 503 662 449 389 436 465 374 426 388 466 429 493 474 532 539 511 532 526 534 520 562 539 533 516 543 548 ]
C [ 749 845 863 857 773 945 856 945 912 883 891 1012 966 742 896 439 318 45 2683 15 71 2555 13 1420 950 474 1216 1202 729 907 757 1167 793 1064 1123 823 868 918 821 912 857 826 807 836 807 829 821 746 831 816 ]
G [ 880 815 869 847 881 830 920 799 855 855 859 784 799 944 973 313 1243 701 15 2687 13 32 77 287 343 828 689 719 1026 921 1139 714 1169 762 768 936 844 751 836 789 790 859 845 846 850 850 833 910 822 830 ]
T [ 566 563 534 485 572 494 484 511 510 505 486 490 557 619 301 1654 965 126 25 5 2622 20 7 918 945 777 387 431 550 448 471 434 391 449 421 489 555 540 545 529 562 530 555 539 522 523 554 569 545 547 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.01 -0.01 -0.01 0.05 -0.03 -0.00 0.00 0.02 0.06 -0.01 0.01 0.01 -0.00 -0.00 ]
C [ 0.01 0.01 -0.00 -0.00 0.00 -0.02 -0.04 0.07 -0.03 0.00 0.03 -0.03 0.02 0.01 -0.00 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.01 0.02 0.01 -0.03 0.07 -0.04 -0.03 0.01 -0.01 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.00 0.00 -0.01 0.03 0.02 -0.00 -0.01 -0.03 0.06 -0.01 -0.02 0.02 0.01 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 5239

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3503

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2213

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1496

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1129

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1121

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 871

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 389

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 294

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 234

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 22

CWM

PFM

     

HCWM

4 profiles found for the same TF (CREM) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001010.1 CREM ENCSR077DKV K562 Homo sapiens MA0609.3
BP001011.1 CREM ENCSR564TIP WTC11 Homo sapiens MA0609.3
BP001012.1 CREM ENCSR799FCZ HepG2 Homo sapiens MA0609.3
BP001013.1 CREM ENCSR839XZU GM12878 Homo sapiens MA0609.3
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