Detailed information of deep learning profile BP001013.1

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This page shows detailed deep learning-derived predictions and motifs for CREM in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CREM
Model ID: BP001013.1
Cell line/tissue: GM12878
Class: Basic leucine zipper factors (bZIP)
Family: CREB-related factors
JASPAR ID: MA0609.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q03060  
Source: ENCSR839XZU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.01 -0.00 -0.00 0.05 0.00 0.00 -0.00 0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.07 0.00 0.01 0.01 -0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 -0.00 0.04 0.00 0.00 0.06 -0.00 0.00 0.00 -0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 0.04 0.00 0.00 -0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1034 989 1063 1093 1043 1064 1102 1088 1054 1013 1044 994 1053 1059 1069 1000 1015 953 1056 959 981 1070 949 864 1225 1472 1680 14 10 4904 0 19 238 1672 2211 932 1089 999 898 1072 1027 967 943 976 955 1052 983 1054 1037 1048 ]
C [ 1495 1416 1477 1426 1451 1430 1363 1351 1426 1447 1404 1418 1405 1458 1504 1315 1383 1650 1298 1632 1554 1501 1336 1277 1503 758 741 110 22 5 4957 0 1517 1663 713 1550 1474 1352 1439 1410 1422 1544 1370 1501 1393 1519 1451 1421 1436 1398 ]
G [ 1366 1483 1411 1424 1425 1394 1460 1452 1472 1495 1510 1449 1519 1464 1504 1700 1604 1471 1716 1490 1514 1384 1871 1862 1042 1708 2399 14 4774 46 0 4948 105 1114 1237 1420 1275 1731 1583 1503 1557 1491 1663 1506 1633 1399 1505 1518 1465 1422 ]
T [ 1077 1084 1021 1029 1053 1084 1047 1081 1020 1017 1014 1111 995 991 895 957 970 898 902 891 923 1017 816 969 1202 1034 152 4834 166 17 15 5 3112 523 811 1070 1134 890 1052 987 966 970 996 989 991 1002 1033 979 1034 1104 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.01 0.02 -0.02 -0.02 0.05 -0.03 0.00 -0.01 0.02 0.02 -0.00 0.00 0.00 -0.00 ]
C [ 0.01 0.01 0.01 -0.00 -0.00 0.01 -0.02 -0.03 0.07 -0.03 0.01 0.01 -0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.00 0.01 0.02 -0.03 0.04 -0.00 -0.02 0.06 -0.02 -0.00 0.01 0.00 0.00 0.01 0.01 ]
T [ -0.00 -0.00 0.01 0.01 -0.01 0.05 0.02 -0.00 -0.00 -0.02 0.03 -0.01 -0.00 0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 5152

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2567

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1472

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1249

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1237

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1216

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 1186

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 1154

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 493

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 452

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 124

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 58

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 43

CWM

PFM

     

HCWM

4 profiles found for the same TF (CREM) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001010.1 CREM ENCSR077DKV K562 Homo sapiens MA0609.3
BP001011.1 CREM ENCSR564TIP WTC11 Homo sapiens MA0609.3
BP001012.1 CREM ENCSR799FCZ HepG2 Homo sapiens MA0609.3
BP001014.1 CREM ENCSR903ELW HepG2 Homo sapiens MA0609.3
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