Detailed information of deep learning profile BP001012.1

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This page shows detailed deep learning-derived predictions and motifs for CREM in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CREM
Model ID: BP001012.1
Cell line/tissue: HepG2
Class: Basic leucine zipper factors (bZIP)
Family: CREB-related factors
JASPAR ID: MA0609.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q03060  
Source: ENCSR799FCZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 0.00 -0.00 -0.00 0.05 -0.00 0.00 0.03 -0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.01 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 -0.00 0.06 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.02 0.00 0.00 0.01 0.00 ]
T [ -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.00 0.03 -0.00 -0.00 0.01 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 230 218 208 211 209 190 196 201 202 192 211 173 166 220 271 149 108 851 3 24 32 65 1198 57 236 386 199 167 186 192 111 148 123 189 161 196 197 221 229 217 215 235 232 211 233 215 214 248 244 240 ]
C [ 421 451 433 466 442 467 454 511 518 464 466 525 479 391 364 190 119 53 1299 1 77 1204 34 627 522 209 590 594 377 509 301 717 311 640 672 405 463 479 413 446 463 401 404 442 418 439 448 393 417 396 ]
G [ 438 411 458 489 448 477 477 431 420 454 423 401 398 411 511 184 695 333 4 1293 13 23 53 153 178 390 374 364 586 441 733 319 769 330 340 557 446 395 463 439 425 442 448 456 470 439 432 454 440 466 ]
T [ 229 238 219 152 219 184 191 175 178 208 218 219 275 296 172 795 396 81 12 0 1196 26 33 481 382 333 155 193 169 176 173 134 115 159 145 160 212 223 213 216 215 240 234 209 197 225 224 223 217 216 ]

Hypothetical CWM

   
A [ -0.01 -0.00 0.00 -0.01 -0.01 0.02 -0.03 -0.01 -0.01 0.00 0.02 -0.01 -0.01 0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.01 -0.01 -0.01 ]
C [ 0.00 -0.00 -0.00 0.00 -0.01 -0.02 0.05 -0.04 -0.00 0.03 -0.02 0.01 0.01 -0.00 0.01 0.01 0.00 0.01 -0.00 0.02 -0.00 0.01 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.01 -0.01 0.02 0.00 -0.03 0.06 -0.02 -0.02 0.01 -0.01 -0.00 0.00 0.00 0.00 0.01 0.01 0.02 -0.00 0.02 -0.00 -0.00 0.01 0.00 ]
T [ -0.00 -0.00 -0.01 0.01 0.01 -0.01 -0.01 -0.03 0.03 -0.01 -0.02 0.01 0.00 -0.01 -0.01 -0.00 -0.01 -0.01 -0.01 -0.01 -0.02 -0.01 -0.01 -0.02 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 214

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 210

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 186

CWM

PFM

     

HCWM

4 profiles found for the same TF (CREM) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001010.1 CREM ENCSR077DKV K562 Homo sapiens MA0609.3
BP001011.1 CREM ENCSR564TIP WTC11 Homo sapiens MA0609.3
BP001013.1 CREM ENCSR839XZU GM12878 Homo sapiens MA0609.3
BP001014.1 CREM ENCSR903ELW HepG2 Homo sapiens MA0609.3
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