Detailed information of deep learning profile BP000995.1

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This page shows detailed deep learning-derived predictions and motifs for TBP in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TBP
Model ID: BP000995.1
Cell line/tissue: HepG2
Class: TATA-binding proteins
Family: TBP-related factors
JASPAR ID: MA0108.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: nan  
Source: ENCSR000EEL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 0.03 0.00 0.03 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 0.02 0.01 0.03 0.00 0.03 0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 243 255 234 234 240 234 227 207 223 199 195 186 245 228 250 195 245 209 194 196 103 119 202 52 377 58 1232 96 1116 455 299 176 213 182 220 189 189 233 225 225 256 236 209 225 221 214 241 227 217 202 ]
C [ 414 410 399 439 450 462 439 421 450 442 486 485 436 427 409 516 481 423 497 402 462 571 506 230 57 25 4 11 31 176 324 543 456 543 424 417 437 423 423 427 382 429 469 448 461 425 418 425 447 435 ]
G [ 416 429 450 436 374 415 420 462 430 453 424 413 427 463 439 426 402 483 438 505 567 357 213 75 39 7 23 10 68 467 545 442 388 443 440 484 465 437 449 429 501 467 463 435 432 451 432 432 402 445 ]
T [ 245 224 235 209 254 207 232 228 215 224 213 234 210 200 220 181 190 203 189 215 186 271 397 961 845 1228 59 1201 103 220 150 157 261 150 234 228 227 225 221 237 179 186 177 210 204 228 227 234 252 236 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.02 0.01 0.04 0.02 0.03 0.01 0.01 -0.00 -0.00 -0.00 -0.01 -0.01 -0.00 -0.01 ]
C [ 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.00 -0.01 -0.01 -0.02 -0.01 -0.01 -0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 ]
G [ 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 ]
T [ -0.01 -0.00 -0.01 -0.01 -0.01 -0.00 -0.00 0.00 0.01 0.02 0.01 0.03 0.01 0.03 0.00 0.01 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1127

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 711

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 579

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 550

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 475

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 415

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 372

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 323

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 300

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 287

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 241

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 230

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 197

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_20

Num. of seqlets: 194

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_22

Num. of seqlets: 163

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_23

Num. of seqlets: 158

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_25

Num. of seqlets: 150

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_31

Num. of seqlets: 101

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_32

Num. of seqlets: 95

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_35

Num. of seqlets: 80

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_37

Num. of seqlets: 57

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_45

Num. of seqlets: 21

CWM

PFM

     

HCWM

3 profiles found for the same TF (TBP) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000992.1 TBP ENCSR000DZZ GM12878 Homo sapiens MA0108.3
BP000993.1 TBP ENCSR000ECB H1 Homo sapiens MA0108.3
BP000994.1 TBP ENCSR000EDD HeLa-S3 Homo sapiens MA0108.3
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