Detailed information of deep learning profile BP000994.1

  1. Home
  2. Deep Learning Profile > BP000994.1
This page shows detailed deep learning-derived predictions and motifs for TBP in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TBP
Model ID: BP000994.1
Cell line/tissue: HeLa-S3
Class: TATA-binding proteins
Family: TBP-related factors
JASPAR ID: MA0108.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: nan  
Source: ENCSR000EDD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 0.00 0.02 0.00 0.03 0.01 0.02 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.00 0.02 0.00 0.03 0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 107 124 122 95 104 96 90 71 90 80 105 99 91 108 110 99 69 77 56 45 96 16 524 17 578 369 483 201 126 76 71 65 85 87 74 88 93 89 103 94 89 96 112 92 96 108 82 83 97 96 ]
C [ 185 196 183 207 190 211 233 231 222 224 203 207 224 235 222 238 195 221 201 264 206 18 5 2 2 8 22 93 150 245 212 235 198 187 174 232 205 221 219 191 216 194 217 198 202 203 214 218 191 220 ]
G [ 217 207 227 200 220 216 195 205 193 202 200 205 183 175 199 202 266 229 266 130 53 6 1 3 5 23 85 223 277 238 219 243 238 230 283 197 234 217 220 227 215 234 198 208 200 194 203 205 194 183 ]
T [ 100 82 77 107 95 86 91 102 104 103 101 98 111 91 78 70 79 82 86 170 254 569 79 587 24 209 19 92 56 50 107 66 88 105 78 92 77 82 67 97 89 85 82 111 111 104 110 103 127 110 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 -0.00 0.01 0.00 0.03 0.01 0.03 0.01 0.02 0.01 0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.00 0.01 0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.00 -0.00 0.00 0.01 0.01 ]
G [ 0.01 0.00 0.01 0.00 -0.01 -0.01 -0.02 -0.01 -0.01 -0.00 0.00 0.00 0.01 0.00 0.01 ]
T [ -0.00 -0.00 0.00 0.01 0.01 0.02 0.01 0.03 0.01 0.02 0.00 0.00 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 6154

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1274

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1172

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 522

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 291

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 101

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 86

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 24

CWM

PFM

     

HCWM

3 profiles found for the same TF (TBP) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000992.1 TBP ENCSR000DZZ GM12878 Homo sapiens MA0108.3
BP000993.1 TBP ENCSR000ECB H1 Homo sapiens MA0108.3
BP000995.1 TBP ENCSR000EEL HepG2 Homo sapiens MA0108.3
Showing 3 profiles of page 1 from 1 pages
  • 1 (current)