Detailed information of deep learning profile BP000992.1

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This page shows detailed deep learning-derived predictions and motifs for TBP in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TBP
Model ID: BP000992.1
Cell line/tissue: GM12878
Class: TATA-binding proteins
Family: TBP-related factors
JASPAR ID: MA0108.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: nan  
Source: ENCSR000DZZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 0.00 0.02 0.00 0.03 0.01 0.02 0.00 0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 0.00 0.02 0.00 0.03 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 289 268 280 260 269 252 261 246 236 280 246 276 219 255 266 189 258 197 148 293 84 1095 93 1418 1168 1047 491 410 210 269 203 241 212 192 237 234 267 244 258 258 227 268 266 248 258 280 262 265 268 272 ]
C [ 500 504 502 492 501 548 495 544 540 540 539 501 559 553 535 508 495 583 648 560 108 60 28 22 33 99 248 348 588 487 549 553 490 486 523 472 481 523 443 504 507 506 486 507 512 484 537 479 504 516 ]
G [ 484 495 487 535 523 501 531 492 489 478 497 534 526 535 496 634 559 548 405 198 70 45 19 24 87 355 553 654 643 540 563 522 590 639 526 607 578 572 598 514 556 507 492 498 486 492 455 510 480 461 ]
T [ 275 281 279 261 255 247 261 266 283 250 266 237 244 205 251 217 236 220 347 497 1286 348 1408 84 260 47 256 136 107 252 233 232 256 231 262 235 222 209 249 272 258 267 304 295 292 292 294 294 296 299 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 0.00 0.00 -0.00 0.01 0.01 0.03 0.02 0.03 0.02 0.02 0.01 0.01 0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 -0.00 -0.01 -0.00 -0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.01 0.01 -0.00 0.00 -0.01 -0.00 -0.01 -0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 0.00 0.00 0.01 0.01 0.03 0.02 0.03 0.02 0.03 0.00 0.01 -0.00 -0.00 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2834

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2338

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2142

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 811

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 732

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 680

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 43

CWM

PFM

     

HCWM

3 profiles found for the same TF (TBP) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000993.1 TBP ENCSR000ECB H1 Homo sapiens MA0108.3
BP000994.1 TBP ENCSR000EDD HeLa-S3 Homo sapiens MA0108.3
BP000995.1 TBP ENCSR000EEL HepG2 Homo sapiens MA0108.3
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