Detailed information of deep learning profile BP000995.1

  1. Home
  2. Deep Learning Profile > BP000995.1
This page shows detailed deep learning-derived predictions and motifs for TBP in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TBP
Model ID: BP000995.1
Cell line/tissue: HepG2
Class: TATA-binding proteins
Family: TBP-related factors
JASPAR ID: MA0108.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: nan  
Source: ENCSR000EEL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 0.00 0.03 0.00 0.03 0.01 0.02 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 0.03 0.00 0.03 0.00 0.01 0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 236 252 234 227 228 204 210 177 186 179 237 221 225 227 228 234 150 261 157 150 220 103 1201 59 1228 845 961 397 271 186 215 189 203 190 181 220 200 210 234 213 224 215 228 232 207 254 209 235 224 245 ]
C [ 445 402 432 432 451 432 435 463 467 501 429 449 437 465 484 440 443 388 442 545 467 68 10 23 7 39 75 213 357 567 505 438 483 402 426 439 463 427 413 424 453 430 462 420 415 374 436 450 429 416 ]
G [ 435 447 425 418 425 461 448 469 429 382 427 423 423 437 417 424 543 456 543 324 176 31 11 4 25 57 230 506 571 462 402 497 423 481 516 409 427 436 485 486 442 450 421 439 462 450 439 399 410 414 ]
T [ 202 217 227 241 214 221 225 209 236 256 225 225 233 189 189 220 182 213 176 299 455 1116 96 1232 58 377 52 202 119 103 196 194 209 245 195 250 228 245 186 195 199 223 207 227 234 240 234 234 255 243 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.01 0.00 0.03 0.01 0.03 0.01 0.02 0.01 0.00 -0.00 -0.00 -0.01 -0.01 -0.01 -0.00 -0.01 ]
C [ 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.00 ]
G [ 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 -0.00 -0.01 -0.01 -0.02 -0.01 -0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 ]
T [ -0.01 -0.00 -0.01 -0.01 -0.00 -0.00 -0.00 0.01 0.01 0.03 0.02 0.04 0.01 0.02 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1127

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 711

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 579

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 550

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 475

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 415

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 372

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 323

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 300

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 287

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 241

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 230

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 197

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_20

Num. of seqlets: 194

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_22

Num. of seqlets: 163

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_23

Num. of seqlets: 158

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_25

Num. of seqlets: 150

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_31

Num. of seqlets: 101

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_32

Num. of seqlets: 95

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_35

Num. of seqlets: 80

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_37

Num. of seqlets: 57

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_45

Num. of seqlets: 21

CWM

PFM

     

HCWM

3 profiles found for the same TF (TBP) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000992.1 TBP ENCSR000DZZ GM12878 Homo sapiens MA0108.3
BP000993.1 TBP ENCSR000ECB H1 Homo sapiens MA0108.3
BP000994.1 TBP ENCSR000EDD HeLa-S3 Homo sapiens MA0108.3
Showing 3 profiles of page 1 from 1 pages
  • 1 (current)