Detailed information of deep learning profile BP000993.1

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This page shows detailed deep learning-derived predictions and motifs for TBP in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TBP
Model ID: BP000993.1
Cell line/tissue: H1
Class: TATA-binding proteins
Family: TBP-related factors
JASPAR ID: MA0108.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: nan  
Source: ENCSR000ECB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 0.00 0.02 0.00 0.04 0.01 0.02 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 0.03 0.00 0.04 0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 216 248 234 203 177 190 214 180 258 234 264 233 218 211 212 246 135 116 289 59 1063 51 1459 1169 1081 552 284 153 194 156 194 180 162 211 214 212 181 242 209 198 218 215 234 227 198 223 241 227 261 257 ]
C [ 561 540 502 558 596 533 603 617 522 559 484 570 617 505 488 483 570 678 620 129 21 20 6 11 64 192 370 671 592 598 558 520 453 586 571 521 527 506 543 554 571 516 506 501 494 531 502 535 499 482 ]
G [ 497 486 572 537 523 504 460 478 467 504 505 497 468 533 585 558 615 357 183 41 21 9 9 57 321 536 756 591 480 597 540 575 704 512 525 510 600 551 571 541 494 535 523 526 556 512 497 508 488 505 ]
T [ 230 230 196 206 208 277 227 229 257 207 251 204 201 255 219 217 184 353 412 1275 399 1424 30 267 38 224 94 89 238 153 212 229 185 195 194 261 196 205 181 211 221 238 241 250 256 238 264 234 256 260 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 -0.01 -0.01 0.01 -0.00 0.03 0.01 0.04 0.02 0.02 0.01 0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 ]
C [ 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 -0.00 -0.01 -0.01 -0.02 -0.01 -0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 -0.00 -0.01 -0.02 -0.02 -0.01 -0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.00 ]
T [ -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.01 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 0.01 0.01 0.03 0.02 0.04 0.01 0.03 -0.01 0.00 -0.01 -0.01 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2457

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1996

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1839

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 993

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 968

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 564

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 538

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 470

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 466

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 407

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 402

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 358

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 214

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 102

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 101

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 90

CWM

PFM

     

HCWM

3 profiles found for the same TF (TBP) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000992.1 TBP ENCSR000DZZ GM12878 Homo sapiens MA0108.3
BP000994.1 TBP ENCSR000EDD HeLa-S3 Homo sapiens MA0108.3
BP000995.1 TBP ENCSR000EEL HepG2 Homo sapiens MA0108.3
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