Detailed information of deep learning profile BP000994.1

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This page shows detailed deep learning-derived predictions and motifs for TBP in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TBP
Model ID: BP000994.1
Cell line/tissue: HeLa-S3
Class: TATA-binding proteins
Family: TBP-related factors
JASPAR ID: MA0108.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: nan  
Source: ENCSR000EDD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.00 0.03 0.00 0.02 0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 0.02 0.01 0.03 0.00 0.02 0.00 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 110 127 103 110 104 111 111 82 85 89 97 67 82 77 92 78 105 88 66 107 50 56 92 19 209 24 587 79 569 254 170 86 82 79 70 78 91 111 98 101 103 104 102 91 86 95 107 77 82 100 ]
C [ 183 194 205 203 194 200 208 198 234 215 227 220 217 234 197 283 230 238 243 219 238 277 223 85 23 5 3 1 6 53 130 266 229 266 202 199 175 183 205 200 202 193 205 195 216 220 200 227 207 217 ]
G [ 220 191 218 214 203 202 198 217 194 216 191 219 221 205 232 174 187 198 235 212 245 150 93 22 8 2 2 5 18 206 264 201 221 195 238 222 235 224 207 203 224 222 231 233 211 190 207 183 196 185 ]
T [ 96 97 83 82 108 96 92 112 96 89 94 103 89 93 88 74 87 85 65 71 76 126 201 483 369 578 17 524 16 96 45 56 77 69 99 110 108 91 99 105 80 90 71 90 96 104 95 122 124 107 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 0.00 0.00 0.02 0.01 0.03 0.01 0.02 0.01 0.01 0.00 -0.00 -0.00 ]
C [ 0.01 0.00 0.01 0.00 0.00 -0.00 -0.01 -0.01 -0.02 -0.01 -0.01 0.00 0.01 0.00 0.01 ]
G [ 0.01 0.01 0.00 -0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.00 0.00 0.01 0.00 0.01 0.01 ]
T [ -0.00 -0.00 0.00 0.01 0.02 0.01 0.03 0.01 0.03 0.00 0.01 -0.00 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 6154

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1274

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1172

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 522

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 291

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 101

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 86

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 24

CWM

PFM

     

HCWM

3 profiles found for the same TF (TBP) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000992.1 TBP ENCSR000DZZ GM12878 Homo sapiens MA0108.3
BP000993.1 TBP ENCSR000ECB H1 Homo sapiens MA0108.3
BP000995.1 TBP ENCSR000EEL HepG2 Homo sapiens MA0108.3
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