Detailed information of deep learning profile BP000993.1

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This page shows detailed deep learning-derived predictions and motifs for TBP in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TBP
Model ID: BP000993.1
Cell line/tissue: H1
Class: TATA-binding proteins
Family: TBP-related factors
JASPAR ID: MA0108.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: nan  
Source: ENCSR000ECB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.00 0.04 0.00 0.03 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 0.02 0.01 0.04 0.00 0.02 0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 260 256 234 264 238 256 250 241 238 221 211 181 205 196 261 194 195 185 229 212 153 238 89 94 224 38 267 30 1424 399 1275 412 353 184 217 219 255 201 204 251 207 257 229 227 277 208 206 196 230 230 ]
C [ 505 488 508 497 512 556 526 523 535 494 541 571 551 600 510 525 512 704 575 540 597 480 591 756 536 321 57 9 9 21 41 183 357 615 558 585 533 468 497 505 504 467 478 460 504 523 537 572 486 497 ]
G [ 482 499 535 502 531 494 501 506 516 571 554 543 506 527 521 571 586 453 520 558 598 592 671 370 192 64 11 6 20 21 129 620 678 570 483 488 505 617 570 484 559 522 617 603 533 596 558 502 540 561 ]
T [ 257 261 227 241 223 198 227 234 215 218 198 209 242 181 212 214 211 162 180 194 156 194 153 284 552 1081 1169 1459 51 1063 59 289 116 135 246 212 211 218 233 264 234 258 180 214 190 177 203 234 248 216 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 -0.01 -0.01 0.00 -0.01 0.03 0.01 0.04 0.02 0.03 0.01 0.01 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.01 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 ]
C [ 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 -0.01 -0.01 -0.02 -0.02 -0.01 -0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 -0.01 -0.01 -0.02 -0.01 -0.01 -0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 ]
T [ -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 0.00 0.01 0.02 0.02 0.04 0.01 0.03 -0.00 0.01 -0.01 -0.01 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2457

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1996

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1839

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 993

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 968

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 564

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 538

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 470

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 466

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 407

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 402

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 358

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 214

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 102

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 101

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 90

CWM

PFM

     

HCWM

3 profiles found for the same TF (TBP) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000992.1 TBP ENCSR000DZZ GM12878 Homo sapiens MA0108.3
BP000994.1 TBP ENCSR000EDD HeLa-S3 Homo sapiens MA0108.3
BP000995.1 TBP ENCSR000EEL HepG2 Homo sapiens MA0108.3
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