Detailed information of deep learning profile BP000992.1

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This page shows detailed deep learning-derived predictions and motifs for TBP in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TBP
Model ID: BP000992.1
Cell line/tissue: GM12878
Class: TATA-binding proteins
Family: TBP-related factors
JASPAR ID: MA0108.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: nan  
Source: ENCSR000DZZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.02 0.00 0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 0.00 0.02 0.01 0.03 0.00 0.02 0.00 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 299 296 294 294 292 292 295 304 267 258 272 249 209 222 235 262 231 256 232 233 252 107 136 256 47 260 84 1408 348 1286 497 347 220 236 217 251 205 244 237 266 250 283 266 261 247 255 261 279 281 275 ]
C [ 461 480 510 455 492 486 498 492 507 556 514 598 572 578 607 526 639 590 522 563 540 643 654 553 355 87 24 19 45 70 198 405 548 559 634 496 535 526 534 497 478 489 492 531 501 523 535 487 495 484 ]
G [ 516 504 479 537 484 512 507 486 506 507 504 443 523 481 472 523 486 490 553 549 487 588 348 248 99 33 22 28 60 108 560 648 583 495 508 535 553 559 501 539 540 540 544 495 548 501 492 502 504 500 ]
T [ 272 268 265 262 280 258 248 266 268 227 258 258 244 267 234 237 192 212 241 203 269 210 410 491 1047 1168 1418 93 1095 84 293 148 197 258 189 266 255 219 276 246 280 236 246 261 252 269 260 280 268 289 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 -0.00 -0.00 0.01 0.00 0.03 0.02 0.03 0.02 0.03 0.01 0.01 0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 -0.00 -0.01 -0.00 -0.01 0.00 -0.00 0.01 0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 -0.01 -0.00 -0.01 -0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 0.00 0.00 0.01 0.01 0.02 0.02 0.03 0.02 0.03 0.01 0.01 -0.00 0.00 0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2834

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2338

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2142

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 811

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 732

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 680

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 43

CWM

PFM

     

HCWM

3 profiles found for the same TF (TBP) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000993.1 TBP ENCSR000ECB H1 Homo sapiens MA0108.3
BP000994.1 TBP ENCSR000EDD HeLa-S3 Homo sapiens MA0108.3
BP000995.1 TBP ENCSR000EEL HepG2 Homo sapiens MA0108.3
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