Detailed information of deep learning profile BP000981.1

  1. Home
  2. Deep Learning Profile > BP000981.1
This page shows detailed deep learning-derived predictions and motifs for HNF4A in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF4A
Model ID: BP000981.1
Cell line/tissue: liver
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0114.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P41235  
Source: ENCSR601OGE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.07 0.05 0.06 -0.00 -0.00 -0.00 -0.00 0.03 0.00 0.00 -0.00 -0.00 ]
C [ 0.01 0.00 0.00 -0.00 -0.00 -0.00 0.01 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.06 0.02 0.00 -0.00 0.00 0.00 0.00 0.11 0.01 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.04 0.01 0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 6318 6211 6030 6549 6622 6530 6284 6058 6259 6110 6390 6686 6443 5912 5790 5833 7764 7124 10501 2656 4293 3713 395 21271 18568 20416 270 1185 1489 572 15972 6726 6932 5138 5203 5546 6114 5878 6246 6525 6248 6435 6370 6235 6257 6229 6711 6166 6137 6395 ]
C [ 5170 4973 5083 5005 4866 5250 5195 5656 5246 5044 4711 4751 4820 5562 6438 7149 5629 4884 1164 723 1387 6784 19549 434 533 46 187 185 9145 18376 1904 5115 4317 4614 4648 5628 5521 5306 5136 5037 5036 5237 4901 5253 5075 5121 5130 5094 5273 5203 ]
G [ 5211 5672 5511 5239 5307 5273 5263 5051 4851 5006 5385 5845 5864 5750 4966 4113 3965 6885 7944 17006 9416 5006 486 733 2937 1846 21813 7642 2543 503 2099 6063 5053 6047 5395 5580 5032 5281 5136 5163 5331 5204 5609 5387 5370 5307 5162 5377 5368 5171 ]
T [ 6012 5855 6087 5918 5916 5658 5969 5946 6355 6551 6225 5429 5584 5487 5517 5616 5353 3818 3102 2326 7615 7208 2281 273 673 403 441 13699 9534 3260 2736 4807 6409 6912 7465 5957 6044 6246 6193 5986 6096 5835 5831 5836 6009 6054 5708 6074 5933 5942 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 0.01 0.00 0.02 -0.01 -0.00 -0.01 -0.04 0.07 0.06 0.07 -0.02 -0.02 -0.02 -0.04 0.04 0.01 -0.00 -0.01 -0.01 ]
C [ 0.02 0.02 0.03 0.02 0.02 0.00 -0.02 -0.02 0.04 0.09 -0.02 -0.03 -0.03 -0.02 -0.04 0.04 0.09 -0.01 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.04 0.08 0.04 0.01 -0.02 0.02 0.01 0.03 0.11 0.04 -0.00 -0.02 0.03 0.01 0.01 0.02 0.02 ]
T [ -0.01 -0.00 -0.00 -0.00 -0.01 -0.02 -0.01 0.02 0.02 0.01 -0.04 -0.01 -0.03 -0.02 0.06 0.03 0.01 -0.02 -0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 7613

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2702

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1341

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1249

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1044

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 984

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 458

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 409

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 358

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 327

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 234

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 151

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 126

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 109

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 51

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_21

Num. of seqlets: 35

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_22

Num. of seqlets: 26

CWM

PFM

     

HCWM

4 profiles found for the same TF (HNF4A) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000977.1 HNF4A ENCSR000BLF HepG2 Homo sapiens MA0114.5
BP000978.1 HNF4A ENCSR000EEU HepG2 Homo sapiens MA0114.5
BP000979.1 HNF4A ENCSR445QRF liver Homo sapiens MA0114.5
BP000980.1 HNF4A ENCSR469FBY HepG2 Homo sapiens MA0114.5
Showing 4 profiles of page 1 from 1 pages
  • 1 (current)