Detailed information of deep learning profile BP000980.1

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This page shows detailed deep learning-derived predictions and motifs for HNF4A in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF4A
Model ID: BP000980.1
Cell line/tissue: HepG2
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0114.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P41235  
Source: ENCSR469FBY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.01 0.04 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.01 0.11 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.06 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 0.01 -0.00 -0.00 -0.00 0.00 0.00 0.01 ]
T [ -0.00 -0.00 0.00 0.00 0.03 -0.00 -0.00 -0.00 -0.00 0.06 0.06 0.07 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 5142 5093 5204 5139 5185 5086 5043 4848 5094 5201 5220 5233 5245 5548 5256 6524 6115 5147 4214 2276 2428 8552 12919 49 285 639 189 1832 6760 8249 1515 2666 3049 4833 4939 4969 5020 4898 4780 5054 5397 5533 5117 5297 4985 5161 5091 5371 5254 5338 ]
C [ 5229 5027 5069 4890 5086 5387 5170 5413 4988 5010 4974 4882 5113 4881 5075 4963 5678 5072 5824 1911 393 2213 5746 20491 1998 2889 813 400 4241 6142 16735 7925 7359 4163 4171 4934 5330 5437 5370 5252 5087 4909 4863 4911 5190 4970 5011 5264 5339 5130 ]
G [ 4724 4889 4844 5051 4880 4798 4898 4659 4928 4996 4745 4923 5145 4993 5581 4730 4612 4357 4966 1789 17433 8733 366 46 42 502 266 18173 6591 2125 610 845 3892 4524 6460 5704 5170 4770 4621 4637 4721 4879 5177 5145 4959 4786 4994 4733 4810 4846 ]
T [ 5592 5678 5570 5607 5536 5416 5576 5767 5677 5480 5748 5649 5184 5265 4775 4470 4282 6111 5683 14711 433 1189 1656 101 18362 16657 19419 282 3095 4171 1827 9251 6387 7167 5117 5080 5167 5582 5916 5744 5482 5366 5530 5334 5553 5770 5591 5319 5284 5373 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 0.01 0.04 0.06 -0.03 -0.03 -0.01 -0.03 0.02 0.02 0.03 -0.01 -0.02 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.00 0.02 -0.02 -0.00 0.03 0.11 0.02 0.01 0.03 -0.01 0.01 0.02 0.07 0.03 0.02 0.00 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.01 0.08 0.04 -0.03 -0.02 -0.02 -0.04 -0.02 0.08 0.03 -0.01 -0.03 -0.01 0.01 0.01 0.02 0.01 ]
T [ -0.01 -0.01 0.00 0.01 0.04 -0.04 -0.02 -0.01 -0.02 0.06 0.07 0.07 -0.04 -0.01 0.00 -0.01 0.02 0.01 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4304

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3661

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2993

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 2074

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 909

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 790

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 711

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 520

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 466

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 57

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 49

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 27

CWM

PFM

     

HCWM

4 profiles found for the same TF (HNF4A) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000977.1 HNF4A ENCSR000BLF HepG2 Homo sapiens MA0114.5
BP000978.1 HNF4A ENCSR000EEU HepG2 Homo sapiens MA0114.5
BP000979.1 HNF4A ENCSR445QRF liver Homo sapiens MA0114.5
BP000981.1 HNF4A ENCSR601OGE liver Homo sapiens MA0114.5
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