Detailed information of deep learning profile BP000979.1

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This page shows detailed deep learning-derived predictions and motifs for HNF4A in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF4A
Model ID: BP000979.1
Cell line/tissue: liver
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0114.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P41235  
Source: ENCSR445QRF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.08 0.06 0.07 0.00 -0.00 -0.00 -0.00 0.03 0.00 0.00 -0.00 -0.00 ]
C [ 0.01 0.00 0.00 -0.00 -0.00 -0.00 0.01 0.09 -0.00 -0.00 -0.00 0.00 -0.00 0.02 0.08 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 0.06 0.02 0.00 -0.00 0.00 -0.00 0.00 0.12 0.02 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.05 0.02 0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 6117 5956 6083 6470 6366 6366 6100 5892 6035 5982 6198 6563 6411 5774 5539 5642 7442 6930 10145 2530 3980 3470 475 20808 18357 19495 165 1073 1293 751 15398 6629 6627 5206 5148 5394 5873 5592 6115 6555 6102 6359 6277 6101 6082 6178 6453 6091 6042 6098 ]
C [ 5104 5040 4961 4968 4851 5128 5242 5535 5278 4940 4749 4592 4716 5514 6401 7052 5455 4593 1130 725 1417 6786 18949 446 509 84 45 248 9263 17797 2010 5137 4303 4487 4675 5488 5351 5336 5094 5085 4976 5200 4901 5127 5017 5062 5156 5020 5146 5280 ]
G [ 5295 5555 5372 5125 5240 5279 5275 4946 4767 5147 5417 5754 5917 5709 4922 4133 4118 7123 8026 16675 9301 4934 501 796 2854 2280 22026 7640 2496 506 2281 5880 5045 5820 5399 5525 5140 5284 5176 4967 5258 5143 5516 5256 5291 5243 5043 5278 5291 5210 ]
T [ 5818 5783 5918 5771 5877 5561 5717 5961 6254 6265 5970 5425 5290 5337 5472 5507 5319 3688 3033 2404 7636 7144 2409 284 614 475 98 13373 9282 3280 2645 4688 6359 6821 7112 5927 5970 6122 5949 5727 5998 5632 5640 5850 5944 5851 5682 5945 5855 5746 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 0.01 0.01 0.02 -0.01 -0.00 -0.01 -0.04 0.08 0.08 0.07 -0.03 -0.03 -0.02 -0.05 0.04 0.01 0.00 -0.00 -0.01 ]
C [ 0.02 0.02 0.03 0.02 0.02 -0.00 -0.03 -0.02 0.04 0.10 -0.03 -0.03 -0.03 -0.02 -0.05 0.05 0.09 -0.01 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.09 0.05 0.01 -0.01 0.03 0.01 0.02 0.12 0.05 0.00 -0.02 0.03 0.01 0.01 0.02 0.02 ]
T [ -0.00 -0.00 0.00 -0.00 -0.01 -0.02 -0.00 0.03 0.03 0.02 -0.04 -0.01 -0.03 -0.02 0.07 0.04 0.01 -0.03 -0.00 0.01 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6014

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2452

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1870

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1348

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 935

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 612

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 547

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 517

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 363

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 327

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 149

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 119

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 119

CWM

PFM

     

HCWM

4 profiles found for the same TF (HNF4A) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000977.1 HNF4A ENCSR000BLF HepG2 Homo sapiens MA0114.5
BP000978.1 HNF4A ENCSR000EEU HepG2 Homo sapiens MA0114.5
BP000980.1 HNF4A ENCSR469FBY HepG2 Homo sapiens MA0114.5
BP000981.1 HNF4A ENCSR601OGE liver Homo sapiens MA0114.5
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