JASPAR - HNF4A - BP000978.1

This page shows detailed deep learning-derived predictions and motifs for HNF4A in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	HNF4A
Model ID:	BP000978.1
Cell line/tissue:	HepG2
Class:	Nuclear receptors with C4 zinc fingers
Family:	RXR-related receptors (NR2)
JASPAR ID:	MA0114.5
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P41235
Source:	ENCSR000EEU
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 13292

Contribution weight matrix (CWM)

A [	0.00	0.00	-0.00	-0.00	-0.00	0.01	0.04	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.01	-0.00	-0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	0.00	-0.00	-0.00	0.01	0.11	0.00	-0.00	0.00	-0.00	0.00	0.00	0.06	0.01	0.01	-0.00	0.00	]
G [	0.00	0.00	0.00	-0.00	0.07	0.02	-0.00	-0.00	-0.00	-0.00	-0.00	0.07	0.01	-0.00	-0.00	-0.00	0.00	0.00	0.01	]
T [	-0.00	-0.00	0.00	0.03	-0.00	-0.00	-0.00	-0.00	0.05	0.05	0.07	-0.00	-0.00	-0.00	-0.00	0.01	-0.00	0.00	-0.00	]

Frequency matrix

A [	2948	3156	3092	3050	3037	3044	2980	3018	3118	2945	3143	3126	3186	3231	3777	3707	3036	2406	1425	1354	4778	8507	41	227	443	248	1041	3983	4770	1085	1707	1888	2994	3019	2945	2831	3037	2930	3105	3044	3165	3218	3097	3039	3071	3082	3025	3111	3040	3123	]
C [	3515	3499	3425	3595	3638	3650	3531	3582	3449	3583	3546	3527	3539	3597	3480	3930	3658	4253	1480	300	1518	3535	13180	1889	2432	737	295	2928	4374	10534	5370	5084	3010	2800	3418	3673	3781	3728	3531	3574	3505	3379	3546	3512	3526	3543	3675	3729	3585	3397	]
G [	3604	3273	3507	3375	3347	3395	3265	3449	3474	3310	3350	3555	3599	3678	3319	3088	3099	3272	1242	11316	6300	395	25	60	332	376	11655	4530	1618	473	747	2786	3184	4422	4042	3591	3185	3227	3268	3333	3401	3447	3455	3276	3433	3358	3349	3268	3417	3342	]
T [	3225	3364	3268	3272	3270	3203	3516	3243	3251	3454	3253	3084	2968	2786	2716	2567	3499	3361	9145	322	696	855	46	11116	10085	11931	301	1851	2530	1200	5468	3534	4104	3051	2887	3197	3289	3407	3388	3341	3221	3248	3194	3465	3262	3309	3243	3184	3250	3430	]

Hypothetical CWM

A [	0.00	0.00	0.00	-0.01	-0.03	0.00	0.03	0.06	-0.03	-0.04	-0.01	-0.04	0.01	0.01	0.03	-0.01	-0.02	-0.01	-0.00	-0.00	-0.01	]
C [	0.01	0.01	0.01	0.01	0.03	-0.03	-0.01	0.02	0.11	0.01	0.00	0.02	-0.02	0.01	0.02	0.07	0.03	0.02	0.00	0.01	0.01	]
G [	0.01	0.01	0.01	0.01	-0.02	0.08	0.04	-0.04	-0.03	-0.03	-0.04	-0.04	0.08	0.03	-0.00	-0.03	-0.01	0.01	0.01	0.02	0.02	]
T [	-0.01	-0.01	-0.00	0.01	0.04	-0.05	-0.02	-0.02	-0.04	0.06	0.06	0.07	-0.04	-0.01	-0.00	-0.01	0.01	-0.00	0.01	-0.01	-0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1279

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 726

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 378

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 321

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 313

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 266

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 155

CWM

PFM

HCWM

4 profiles found for the same TF (HNF4A) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000977.1	HNF4A	ENCSR000BLF	HepG2	Homo sapiens	MA0114.5
BP000979.1	HNF4A	ENCSR445QRF	liver	Homo sapiens	MA0114.5
BP000980.1	HNF4A	ENCSR469FBY	HepG2	Homo sapiens	MA0114.5
BP000981.1	HNF4A	ENCSR601OGE	liver	Homo sapiens	MA0114.5