Detailed information of deep learning profile BP000949.1

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This page shows detailed deep learning-derived predictions and motifs for E2F4 in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: E2F4
Model ID: BP000949.1
Cell line/tissue: HeLa-S3
Class: Fork head/winged helix factors
Family: E2F
JASPAR ID: MA0470.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q16254  
Source: ENCSR000EVL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.02 0.01 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.01 -0.00 0.07 0.00 0.01 0.00 0.00 -0.00 -0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.01 0.05 0.00 0.06 0.02 0.03 -0.00 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 482 437 477 428 463 462 436 484 468 437 474 436 463 452 474 471 421 443 489 470 515 461 567 349 667 390 223 2 0 0 21 56 1916 1495 867 569 472 419 506 649 590 501 450 486 482 478 459 493 468 427 ]
C [ 808 861 787 766 810 764 816 796 761 739 764 758 763 787 733 780 838 822 726 730 730 744 716 739 598 416 920 28 2474 5 761 224 292 210 528 572 586 671 657 601 641 693 736 713 711 685 745 747 694 753 ]
G [ 801 792 780 871 805 807 798 792 825 883 828 851 841 807 816 774 788 771 809 786 835 891 763 993 686 1018 1326 2444 0 2469 1677 2123 153 537 704 665 753 852 922 824 829 795 848 828 846 868 845 821 865 857 ]
T [ 384 385 431 410 397 442 425 403 421 416 409 430 408 429 452 450 428 439 451 489 395 379 429 394 524 651 6 1 1 1 16 72 114 233 376 669 664 533 390 401 415 486 441 448 436 444 426 414 448 438 ]

Hypothetical CWM

   
A [ 0.00 -0.01 -0.00 -0.01 -0.01 -0.04 -0.03 -0.05 -0.04 -0.03 0.02 0.02 0.01 0.00 ]
C [ 0.01 0.01 0.01 0.00 0.03 0.01 0.07 -0.00 0.04 0.01 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.01 0.00 0.01 0.02 0.05 -0.01 0.06 0.02 0.03 -0.01 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 -0.04 -0.04 -0.05 -0.04 -0.04 -0.02 -0.01 -0.00 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 284

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 162

CWM

PFM

     

HCWM

6 profiles found for the same TF (E2F4) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000947.1 E2F4 ENCSR000DOR MCF 10A Homo sapiens MA0470.3
BP000948.1 E2F4 ENCSR000DYY GM12878 Homo sapiens MA0470.3
BP000950.1 E2F4 ENCSR000EWL K562 Homo sapiens MA0470.3
BP000951.1 E2F4 ENCSR264OKN WTC11 Homo sapiens MA0470.3
BP000952.1 E2F4 ENCSR368GJN K562 Homo sapiens MA0470.3
BP000953.1 E2F4 ENCSR924LSO HepG2 Homo sapiens MA0470.3
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