JASPAR - E2F4 - BP000948.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for E2F4 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	E2F4
Model ID:	BP000948.1
Cell line/tissue:	GM12878
Class:	Fork head/winged helix factors
Family:	E2F
JASPAR ID:	MA0470.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q16254
Source:	ENCSR000DYY
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 1140

Contribution weight matrix (CWM)

A [	0.00	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.00	-0.00	-0.00	0.00	0.00	-0.00	]
C [	0.00	-0.00	-0.00	-0.00	0.00	0.02	0.02	0.06	0.00	0.04	0.02	0.00	0.00	0.00	]
G [	0.00	0.00	-0.00	-0.00	0.00	0.00	0.00	0.00	0.06	0.00	0.00	0.00	-0.00	0.00	]
T [	-0.00	-0.00	0.01	0.02	0.02	-0.00	-0.00	0.00	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	215	192	239	200	222	212	264	269	240	226	182	180	246	240	302	145	43	33	23	4	0	0	2	7	410	249	145	189	200	184	194	200	197	198	225	215	186	210	208	198	197	199	184	212	219	187	199	193	199	195	]
C [	384	393	347	382	438	398	354	341	321	359	375	404	349	322	279	259	149	35	999	1043	1140	1	1100	922	325	414	505	361	396	418	355	355	381	367	389	376	410	394	376	387	424	387	383	378	380	396	380	366	388	384	]
G [	322	325	318	344	281	313	310	310	318	238	248	262	349	303	269	233	82	19	90	90	0	1139	34	132	191	179	347	351	378	311	317	358	361	382	326	338	328	335	353	349	307	343	357	310	341	342	337	374	360	345	]
T [	219	230	236	214	199	217	212	220	261	317	335	294	196	275	290	503	866	1053	28	3	0	0	4	79	214	298	143	239	166	227	274	227	201	193	200	211	216	201	203	206	212	211	216	240	200	215	224	207	193	216	]

Hypothetical CWM

A [	0.01	-0.00	-0.00	-0.00	-0.02	-0.03	-0.04	-0.04	-0.04	-0.04	0.01	0.00	-0.00	-0.00	]
C [	-0.00	-0.00	-0.00	-0.01	0.02	0.02	0.06	-0.02	0.04	0.02	0.00	0.01	0.01	0.00	]
G [	-0.00	-0.00	-0.00	-0.00	0.00	0.03	-0.01	0.06	-0.00	0.02	0.00	-0.00	0.01	0.00	]
T [	-0.00	0.01	0.02	0.02	-0.02	-0.04	-0.05	-0.03	-0.02	-0.01	-0.01	-0.00	-0.01	-0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 586

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 520

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 121

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 78

CWM

PFM

HCWM

6 profiles found for the same TF (E2F4) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000947.1	E2F4	ENCSR000DOR	MCF 10A	Homo sapiens	MA0470.3
BP000949.1	E2F4	ENCSR000EVL	HeLa-S3	Homo sapiens	MA0470.3
BP000950.1	E2F4	ENCSR000EWL	K562	Homo sapiens	MA0470.3
BP000951.1	E2F4	ENCSR264OKN	WTC11	Homo sapiens	MA0470.3
BP000952.1	E2F4	ENCSR368GJN	K562	Homo sapiens	MA0470.3
BP000953.1	E2F4	ENCSR924LSO	HepG2	Homo sapiens	MA0470.3