Detailed information of deep learning profile BP000949.1

  1. Home
  2. Deep Learning Profile > BP000949.1
This page shows detailed deep learning-derived predictions and motifs for E2F4 in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: E2F4
Model ID: BP000949.1
Cell line/tissue: HeLa-S3
Class: Fork head/winged helix factors
Family: E2F
JASPAR ID: MA0470.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q16254  
Source: ENCSR000EVL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 -0.00 0.03 0.02 0.06 0.00 0.05 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 0.07 -0.00 0.01 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.01 0.02 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 438 448 414 426 444 436 448 441 486 415 401 390 533 664 669 376 233 114 72 16 1 1 1 6 651 524 394 429 379 395 489 451 439 428 450 452 429 408 430 409 416 421 403 425 442 397 410 431 385 384 ]
C [ 857 865 821 845 868 846 828 848 795 829 824 922 852 753 665 704 537 153 2123 1677 2469 0 2444 1326 1018 686 993 763 891 835 786 809 771 788 774 816 807 841 851 828 883 825 792 798 807 805 871 780 792 801 ]
G [ 753 694 747 745 685 711 713 736 693 641 601 657 671 586 572 528 210 292 224 761 5 2474 28 920 416 598 739 716 744 730 730 726 822 838 780 733 787 763 758 764 739 761 796 816 764 810 766 787 861 808 ]
T [ 427 468 493 459 478 482 486 450 501 590 649 506 419 472 569 867 1495 1916 56 21 0 0 2 223 390 667 349 567 461 515 470 489 443 421 471 474 452 463 436 474 437 468 484 436 462 463 428 477 437 482 ]

Hypothetical CWM

   
A [ 0.01 -0.00 -0.00 -0.01 -0.02 -0.04 -0.04 -0.05 -0.04 -0.04 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.01 0.03 0.02 0.06 -0.01 0.05 0.02 0.01 0.00 0.01 0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.01 0.04 -0.00 0.07 0.01 0.03 0.00 0.01 0.01 0.01 ]
T [ 0.00 0.01 0.02 0.02 -0.03 -0.04 -0.05 -0.03 -0.04 -0.01 -0.01 -0.00 -0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 284

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 162

CWM

PFM

     

HCWM

6 profiles found for the same TF (E2F4) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000947.1 E2F4 ENCSR000DOR MCF 10A Homo sapiens MA0470.3
BP000948.1 E2F4 ENCSR000DYY GM12878 Homo sapiens MA0470.3
BP000950.1 E2F4 ENCSR000EWL K562 Homo sapiens MA0470.3
BP000951.1 E2F4 ENCSR264OKN WTC11 Homo sapiens MA0470.3
BP000952.1 E2F4 ENCSR368GJN K562 Homo sapiens MA0470.3
BP000953.1 E2F4 ENCSR924LSO HepG2 Homo sapiens MA0470.3
Showing 6 profiles of page 1 from 1 pages
  • 1 (current)