JASPAR - E2F4 - BP000948.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for E2F4 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	E2F4
Model ID:	BP000948.1
Cell line/tissue:	GM12878
Class:	Fork head/winged helix factors
Family:	E2F
JASPAR ID:	MA0470.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q16254
Source:	ENCSR000DYY
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 1140

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.00	-0.00	-0.00	0.02	0.02	0.01	-0.00	-0.00	]
C [	0.00	-0.00	0.00	0.00	0.00	0.06	0.00	0.00	0.00	0.00	-0.00	-0.00	0.00	0.00	]
G [	0.00	0.00	0.00	0.02	0.04	0.00	0.06	0.02	0.02	0.00	-0.00	-0.00	-0.00	0.00	]
T [	-0.00	0.00	0.00	-0.00	-0.00	0.00	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.00	]

Frequency matrix

A [	216	193	207	224	215	200	240	216	211	212	206	203	201	216	211	200	193	201	227	274	227	166	239	143	298	214	79	4	0	0	3	28	1053	866	503	290	275	196	294	335	317	261	220	212	217	199	214	236	230	219	]
C [	345	360	374	337	342	341	310	357	343	307	349	353	335	328	338	326	382	361	358	317	311	378	351	347	179	191	132	34	1139	0	90	90	19	82	233	269	303	349	262	248	238	318	310	310	313	281	344	318	325	322	]
G [	384	388	366	380	396	380	378	383	387	424	387	376	394	410	376	389	367	381	355	355	418	396	361	505	414	325	922	1100	1	1140	1043	999	35	149	259	279	322	349	404	375	359	321	341	354	398	438	382	347	393	384	]
T [	195	199	193	199	187	219	212	184	199	197	198	208	210	186	215	225	198	197	200	194	184	200	189	145	249	410	7	2	0	0	4	23	33	43	145	302	240	246	180	182	226	240	269	264	212	222	200	239	192	215	]

Hypothetical CWM

A [	-0.01	-0.01	-0.00	-0.01	-0.01	-0.02	-0.03	-0.05	-0.04	-0.02	0.02	0.02	0.01	-0.00	]
C [	0.00	0.01	-0.00	0.00	0.02	-0.00	0.06	-0.01	0.03	0.00	-0.00	-0.00	-0.00	-0.00	]
G [	0.00	0.01	0.01	0.00	0.02	0.04	-0.02	0.06	0.02	0.02	-0.01	-0.00	-0.00	-0.00	]
T [	-0.00	-0.00	0.00	0.01	-0.04	-0.04	-0.04	-0.04	-0.03	-0.02	-0.00	-0.00	-0.00	0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 586

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 520

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 121

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 78

CWM

PFM

HCWM

6 profiles found for the same TF (E2F4) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000947.1	E2F4	ENCSR000DOR	MCF 10A	Homo sapiens	MA0470.3
BP000949.1	E2F4	ENCSR000EVL	HeLa-S3	Homo sapiens	MA0470.3
BP000950.1	E2F4	ENCSR000EWL	K562	Homo sapiens	MA0470.3
BP000951.1	E2F4	ENCSR264OKN	WTC11	Homo sapiens	MA0470.3
BP000952.1	E2F4	ENCSR368GJN	K562	Homo sapiens	MA0470.3
BP000953.1	E2F4	ENCSR924LSO	HepG2	Homo sapiens	MA0470.3