JASPAR - ZNF143 - BP000946.1

This page shows detailed deep learning-derived predictions and motifs for ZNF143 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ZNF143
Model ID:	BP000946.1
Cell line/tissue:	GM12878
Class:	C2H2 zinc finger factors
Family:	More than 3 adjacent zinc fingers
JASPAR ID:	MA0088.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P52747
Source:	ENCSR936XTK
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 4087

Contribution weight matrix (CWM)

A [	-0.00	0.00	0.00	0.01	0.04	-0.00	-0.00	0.03	-0.00	0.02	0.01	-0.00	0.00	0.00	-0.00	-0.00	0.04	-0.00	0.01	0.02	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	0.00	0.00	0.05	0.00	0.00	0.04	0.00	0.00	0.00	-0.00	0.07	0.10	0.10	-0.00	-0.00	0.01	-0.00	-0.00	0.00	0.05	0.01	0.01	0.01	-0.00	0.03	-0.00	0.00	0.01	0.00	]
G [	0.00	0.00	0.01	0.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	-0.00	-0.00	0.00	0.00	0.00	0.01	0.02	0.00	0.00	0.00	0.01	-0.00	-0.00	0.00	-0.00	0.03	0.00	0.03	0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.04	-0.00	0.00	-0.00	0.01	0.01	0.03	-0.00	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.01	-0.00	-0.00	0.00	0.00	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	719	851	870	883	923	897	724	977	1059	1300	1316	2500	388	283	2131	349	2355	1015	343	421	68	6	11	3124	317	1451	2477	329	217	107	803	292	370	314	246	834	605	439	706	996	668	663	656	693	701	673	690	624	736	999	]
C [	1437	1432	1334	1277	1274	1284	1351	1189	1033	744	788	705	2771	826	888	2772	698	735	1222	251	3903	4052	4036	20	462	1719	554	255	1487	3781	2053	1903	1623	258	2699	309	1371	1835	1218	1159	1243	1276	1253	1242	1235	1144	1253	1465	1494	1249	]
G [	1132	1103	1151	1286	1261	1179	1124	1225	1217	1644	1626	537	522	530	645	521	647	741	510	166	18	14	9	893	2632	765	836	1254	1906	81	197	552	284	3108	884	2400	1684	985	1174	1340	1534	1488	1287	1418	1222	1544	1415	1164	1137	1075	]
T [	799	701	732	641	629	727	888	696	778	399	357	345	406	2448	423	445	387	1596	2012	3249	98	15	31	50	676	152	220	2249	477	118	1034	1340	1810	407	258	544	427	828	989	592	642	660	891	734	929	726	729	834	720	764	]

Hypothetical CWM

A [	-0.00	-0.00	0.00	0.01	0.04	-0.01	-0.02	0.03	-0.01	0.03	0.02	0.00	0.02	0.01	-0.04	-0.04	0.05	-0.00	0.03	0.04	0.00	-0.01	-0.00	0.01	-0.01	-0.01	-0.01	-0.02	-0.01	-0.01	-0.01	-0.00	-0.00	]
C [	0.01	0.01	0.00	0.00	0.01	0.05	0.00	0.00	0.05	0.00	0.01	0.02	-0.00	0.07	0.10	0.10	-0.04	0.00	0.02	-0.01	0.00	0.01	0.06	0.02	0.02	0.03	-0.01	0.04	-0.01	0.01	0.01	0.01	0.01	]
G [	0.01	0.01	0.02	0.01	-0.01	-0.01	0.00	-0.00	-0.00	0.02	-0.00	0.00	-0.01	-0.05	-0.01	-0.01	0.07	0.03	0.01	0.03	0.02	0.03	-0.00	-0.00	0.01	-0.01	0.04	0.00	0.04	0.01	0.01	0.01	0.01	]
T [	-0.01	-0.01	-0.01	-0.01	-0.03	-0.02	0.04	-0.00	-0.00	-0.01	0.02	0.02	0.04	-0.00	-0.03	-0.03	-0.04	0.02	-0.01	-0.01	0.02	0.00	-0.02	0.01	0.01	0.01	0.00	-0.01	-0.01	-0.01	-0.00	-0.00	-0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 11631

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 809

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 494

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 487

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 347

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 160

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 120

CWM

PFM

HCWM

7 profiles found for the same TF (ZNF143) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000939.1	ZNF143	ENCSR000DZL	GM12878	Homo sapiens	MA0088.2
BP000940.1	ZNF143	ENCSR000EBW	H1	Homo sapiens	MA0088.2
BP000941.1	ZNF143	ENCSR000ECO	HeLa-S3	Homo sapiens	MA0088.2
BP000942.1	ZNF143	ENCSR000EGP	K562	Homo sapiens	MA0088.2
BP000943.1	ZNF143	ENCSR063FUV	WTC11	Homo sapiens	MA0088.2
BP000944.1	ZNF143	ENCSR080UEM	HepG2	Homo sapiens	MA0088.2
BP000945.1	ZNF143	ENCSR427WZJ	K562	Homo sapiens	MA0088.2