JASPAR - ZNF143 - BP000941.1

This page shows detailed deep learning-derived predictions and motifs for ZNF143 in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ZNF143
Model ID:	BP000941.1
Cell line/tissue:	HeLa-S3
Class:	C2H2 zinc finger factors
Family:	More than 3 adjacent zinc fingers
JASPAR ID:	MA0088.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P52747
Source:	ENCSR000ECO
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_2

Number of seqlets: 1220

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.01	0.00	-0.00	-0.00	-0.00	0.02	-0.00	-0.00	0.00	-0.00	-0.00	0.00	-0.00	0.02	0.00	0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	0.00	0.03	-0.00	0.03	-0.00	-0.00	-0.00	-0.00	0.01	0.00	0.00	0.00	0.01	0.01	0.00	0.00	0.00	-0.00	-0.00	-0.00	0.00	0.00	]
G [	0.00	0.00	0.01	0.01	-0.00	0.03	-0.00	0.01	0.00	0.00	0.05	0.00	-0.00	-0.00	0.01	0.00	-0.00	0.05	0.06	0.05	-0.00	0.00	0.00	0.00	0.01	]
T [	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.02	0.01	-0.00	0.03	-0.00	-0.00	0.00	0.00	-0.00	0.00	0.00	-0.00	]

Frequency matrix

A [	226	226	237	200	222	210	226	239	225	189	197	179	174	195	211	169	118	113	68	87	479	290	311	10	125	752	33	28	181	8	5	0	22	947	514	382	173	195	187	363	185	151	151	187	200	204	215	217	188	218	]
C [	381	378	381	392	382	369	378	412	414	412	400	427	403	376	414	336	403	972	199	1063	29	180	45	9	725	333	278	207	761	345	6	5	4	53	205	291	288	253	287	277	261	281	444	439	405	371	368	418	384	381	]
G [	422	397	402	388	405	441	425	373	391	420	410	433	460	452	394	584	531	50	921	32	636	673	524	1196	304	56	78	535	211	4	1205	1213	1181	88	366	344	392	601	461	447	602	376	370	354	404	423	443	384	412	412	]
T [	191	219	200	240	211	200	191	196	190	199	213	181	183	197	201	131	168	85	32	38	76	77	340	5	66	79	831	450	67	863	4	2	13	132	135	203	367	171	285	133	172	412	255	240	211	222	194	201	236	209	]

Hypothetical CWM

A [	-0.00	-0.00	-0.00	-0.00	-0.01	-0.01	-0.00	0.02	0.02	0.00	-0.01	0.00	0.03	-0.01	-0.01	0.01	-0.03	-0.02	-0.03	-0.01	0.03	0.02	0.01	-0.00	-0.00	]
C [	0.01	0.01	0.01	0.01	0.03	0.00	0.04	-0.01	0.00	-0.00	-0.01	0.02	0.01	0.02	0.01	0.02	0.05	0.00	0.01	-0.02	-0.00	0.00	0.00	0.01	0.01	]
G [	0.01	0.00	0.01	0.01	-0.01	0.03	-0.01	0.02	0.01	0.01	0.05	0.01	-0.00	-0.00	0.02	0.01	-0.03	0.05	0.06	0.05	-0.01	0.01	0.01	0.01	0.02	]
T [	-0.00	-0.00	-0.01	-0.00	-0.01	-0.02	-0.01	-0.01	-0.00	0.02	-0.01	-0.01	-0.01	0.03	0.02	-0.01	0.04	-0.02	-0.03	0.01	0.02	0.00	0.00	0.01	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3061

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1937

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 132

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 119

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 74

CWM

PFM

HCWM

7 profiles found for the same TF (ZNF143) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000939.1	ZNF143	ENCSR000DZL	GM12878	Homo sapiens	MA0088.2
BP000940.1	ZNF143	ENCSR000EBW	H1	Homo sapiens	MA0088.2
BP000942.1	ZNF143	ENCSR000EGP	K562	Homo sapiens	MA0088.2
BP000943.1	ZNF143	ENCSR063FUV	WTC11	Homo sapiens	MA0088.2
BP000944.1	ZNF143	ENCSR080UEM	HepG2	Homo sapiens	MA0088.2
BP000945.1	ZNF143	ENCSR427WZJ	K562	Homo sapiens	MA0088.2
BP000946.1	ZNF143	ENCSR936XTK	GM12878	Homo sapiens	MA0088.2