JASPAR - RFX5 - BP000920.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for RFX5 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	RFX5
Model ID:	BP000920.1
Cell line/tissue:	MCF-7
Class:	Fork head/winged helix factors
Family:	RFX-related factors
JASPAR ID:	MA0510.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P48382
Source:	ENCSR924TVL
Model:	BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 4015

Contribution weight matrix (CWM)

A [	0.00	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.03	-0.00	-0.00	-0.00	0.01	0.00	0.01	]
C [	0.00	0.00	0.01	0.00	-0.00	0.00	0.00	-0.00	0.05	0.01	0.00	-0.00	0.00	0.01	0.00	-0.00	0.00	]
G [	0.00	0.00	0.00	-0.00	0.06	-0.00	-0.00	0.03	0.00	0.00	0.00	0.02	0.04	0.00	0.00	0.01	0.00	]
T [	-0.00	-0.00	0.00	0.01	-0.00	0.06	0.03	-0.00	0.00	0.02	-0.00	0.00	-0.00	0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	909	977	932	966	949	929	943	1018	878	872	1091	854	816	981	896	711	350	806	27	7	160	619	29	17	2918	592	108	451	1876	1377	1889	1117	992	1031	826	915	1009	1075	1044	896	913	831	877	878	907	1073	1002	936	836	889	]
C [	999	1056	984	1006	1117	1016	978	1020	884	880	1150	1091	993	1209	1204	1030	2090	351	5	54	361	63	3676	1836	39	161	167	1599	716	473	657	1155	899	859	914	1052	1014	910	986	1014	993	1042	984	1033	940	946	971	1067	1023	1066	]
G [	1176	1066	1141	1100	1050	1142	1209	1054	1147	1321	1020	1218	1154	865	1062	1268	682	824	3977	16	20	2967	66	40	953	2313	3650	1320	954	1858	955	771	982	1073	1373	1266	1164	1219	1068	1231	1241	1109	1251	1095	1314	1051	1058	1078	1094	1064	]
T [	931	916	958	943	899	928	885	923	1106	942	754	852	1052	960	853	1006	893	2034	6	3938	3474	366	244	2122	105	949	90	645	469	307	514	972	1142	1052	902	782	828	811	917	874	868	1033	903	1009	854	945	984	934	1062	996	]

Hypothetical CWM

A [	-0.00	-0.00	0.01	-0.00	-0.01	-0.00	0.01	-0.04	-0.00	0.02	-0.02	-0.05	0.04	-0.00	-0.01	-0.01	0.01	0.01	0.01	0.00	0.00	]
C [	0.00	0.02	0.01	0.01	0.02	0.01	-0.02	-0.00	0.02	-0.03	0.05	0.03	-0.02	-0.01	0.01	0.02	0.01	0.00	0.00	0.01	0.00	]
G [	0.00	0.00	0.01	0.01	0.00	0.00	0.06	-0.01	-0.04	0.04	-0.01	0.00	0.02	0.02	0.04	0.01	0.01	0.02	0.01	0.00	-0.00	]
T [	0.01	0.00	-0.01	0.00	0.01	0.01	-0.04	0.06	0.04	-0.01	0.00	0.03	-0.02	0.00	-0.02	0.00	-0.01	-0.01	-0.01	0.00	0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4293

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2815

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 597

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 186

CWM

PFM

HCWM

7 profiles found for the same TF (RFX5) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000913.1	RFX5	ENCSR000DZW	GM12878	Homo sapiens	MA0510.3
BP000914.1	RFX5	ENCSR000ECF	H1	Homo sapiens	MA0510.3
BP000915.1	RFX5	ENCSR000EEA	HepG2	Homo sapiens	MA0510.3
BP000916.1	RFX5	ENCSR000EFD	IMR-90	Homo sapiens	MA0510.3
BP000917.1	RFX5	ENCSR000EGO	K562	Homo sapiens	MA0510.3
BP000918.1	RFX5	ENCSR000EHY	SK-N-SH	Homo sapiens	MA0510.3
BP000919.1	RFX5	ENCSR064LJN	A549	Homo sapiens	MA0510.3