Detailed information of deep learning profile BP000919.1

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This page shows detailed deep learning-derived predictions and motifs for RFX5 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX5
Model ID: BP000919.1
Cell line/tissue: A549
Class: Fork head/winged helix factors
Family: RFX-related factors
JASPAR ID: MA0510.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48382  
Source: ENCSR064LJN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.03 -0.00 -0.00 -0.00 0.00 0.00 0.01 ]
C [ 0.00 0.00 0.01 0.00 0.00 -0.00 0.00 -0.00 0.05 0.01 -0.00 -0.00 0.00 0.01 0.00 -0.00 -0.00 ]
G [ -0.00 0.00 -0.00 0.00 0.05 -0.00 -0.00 0.03 0.00 0.00 0.00 0.01 0.04 0.01 0.01 0.01 0.00 ]
T [ -0.00 -0.00 0.00 0.00 0.00 0.06 0.04 -0.00 0.00 0.02 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 294 304 322 312 306 285 303 292 313 302 308 331 284 284 316 278 267 252 330 238 116 200 11 6 30 173 8 6 1040 199 33 130 490 499 716 300 301 306 296 305 318 322 315 309 279 288 297 297 267 288 ]
C [ 364 378 369 385 349 389 372 376 385 324 354 348 325 313 386 383 358 488 392 344 704 193 0 8 85 6 1289 600 12 72 32 462 310 117 202 469 362 363 319 347 331 343 393 347 374 392 369 385 374 360 ]
G [ 381 412 416 389 410 408 379 408 387 417 424 418 396 471 397 449 378 298 383 566 233 397 1351 2 6 1079 9 19 287 652 1278 624 410 568 230 315 375 392 479 440 472 428 387 390 433 362 370 392 436 415 ]
T [ 327 272 259 280 301 284 312 290 281 323 280 269 361 298 267 256 363 328 261 218 313 576 4 1350 1245 108 60 741 27 443 23 150 156 182 218 282 328 305 272 274 245 273 271 320 280 324 330 292 289 303 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 -0.00 -0.01 -0.00 0.01 -0.02 -0.01 0.02 -0.03 -0.04 0.04 0.00 -0.01 -0.01 0.01 0.01 0.02 0.00 0.00 0.00 ]
C [ 0.00 0.02 0.01 0.01 0.02 0.01 -0.02 -0.01 0.02 -0.03 0.05 0.03 -0.02 -0.01 0.00 0.02 0.01 -0.01 -0.00 0.00 0.01 0.01 ]
G [ -0.00 0.00 0.00 0.01 -0.00 0.01 0.05 -0.03 -0.04 0.04 -0.01 -0.00 0.01 0.02 0.04 0.01 0.02 0.02 0.00 0.00 -0.00 0.00 ]
T [ 0.01 0.00 -0.01 -0.00 0.01 0.01 -0.03 0.06 0.04 -0.01 0.00 0.03 -0.02 0.00 -0.02 -0.00 -0.01 -0.00 0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2095

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 757

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 215

CWM

PFM

     

HCWM

7 profiles found for the same TF (RFX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000913.1 RFX5 ENCSR000DZW GM12878 Homo sapiens MA0510.3
BP000914.1 RFX5 ENCSR000ECF H1 Homo sapiens MA0510.3
BP000915.1 RFX5 ENCSR000EEA HepG2 Homo sapiens MA0510.3
BP000916.1 RFX5 ENCSR000EFD IMR-90 Homo sapiens MA0510.3
BP000917.1 RFX5 ENCSR000EGO K562 Homo sapiens MA0510.3
BP000918.1 RFX5 ENCSR000EHY SK-N-SH Homo sapiens MA0510.3
BP000920.1 RFX5 ENCSR924TVL MCF-7 Homo sapiens MA0510.3
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