JASPAR - RFX5 - BP000918.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for RFX5 in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	RFX5
Model ID:	BP000918.1
Cell line/tissue:	SK-N-SH
Class:	Fork head/winged helix factors
Family:	RFX-related factors
JASPAR ID:	MA0510.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P48382
Source:	ENCSR000EHY
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 2098

Contribution weight matrix (CWM)

A [	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.03	-0.00	0.00	-0.00	0.01	0.01	0.01	0.00	0.00	0.00	]
C [	0.00	0.01	0.00	0.00	0.02	0.00	-0.00	0.00	0.00	-0.00	0.05	0.02	-0.00	0.00	0.00	0.01	0.00	0.00	0.00	0.01	0.00	0.00	]
G [	0.00	0.00	0.00	0.00	-0.00	0.00	0.06	-0.00	-0.00	0.03	0.00	0.00	0.00	0.02	0.05	0.01	0.00	0.01	0.00	0.00	-0.00	0.00	]
T [	0.00	0.00	-0.00	-0.00	0.00	0.01	-0.00	0.06	0.04	-0.00	-0.00	0.02	-0.00	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.00	-0.00	]

Frequency matrix

A [	461	523	462	476	444	475	455	488	462	536	499	456	447	522	428	433	427	443	349	141	371	8	3	67	295	14	5	1607	332	46	250	961	855	1203	465	550	511	462	482	495	522	503	439	455	463	470	482	458	478	539	]
C [	609	547	551	526	567	551	524	574	517	529	539	514	478	599	608	484	655	655	576	1164	214	1	24	129	23	2002	1025	23	55	30	715	504	210	332	795	458	447	512	524	541	527	575	581	544	537	558	540	534	538	546	]
G [	560	566	598	616	588	558	627	549	611	614	579	570	704	569	668	610	484	540	679	292	493	2087	2	4	1548	10	8	420	1059	2012	929	406	919	363	380	538	678	680	700	628	608	595	580	619	599	590	624	632	561	548	]
T [	468	462	487	480	499	514	492	487	508	419	481	558	469	408	394	571	532	460	494	501	1020	2	2069	1898	232	72	1060	48	652	10	204	227	114	200	458	552	462	444	392	434	441	425	498	480	499	480	452	474	521	465	]

Hypothetical CWM

A [	-0.00	-0.00	0.01	-0.00	-0.01	0.00	0.01	-0.03	-0.00	0.01	-0.02	-0.05	0.03	0.00	0.00	-0.01	0.01	0.02	0.02	0.00	0.00	0.01	]
C [	0.00	0.02	0.01	0.01	0.03	0.00	-0.02	0.00	0.03	-0.02	0.05	0.04	-0.01	-0.01	0.01	0.03	0.02	-0.00	0.00	0.01	0.01	0.01	]
G [	0.00	0.00	0.01	0.02	0.00	0.01	0.06	-0.02	-0.05	0.04	-0.01	-0.01	0.02	0.03	0.05	0.01	0.01	0.03	0.01	0.00	0.00	0.01	]
T [	0.01	0.00	-0.00	-0.00	0.01	0.01	-0.03	0.06	0.04	0.00	0.00	0.04	-0.02	0.01	-0.03	-0.00	-0.01	-0.01	-0.01	0.00	0.01	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4270

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 899

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 350

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 316

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 199

CWM

PFM

HCWM

7 profiles found for the same TF (RFX5) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000913.1	RFX5	ENCSR000DZW	GM12878	Homo sapiens	MA0510.3
BP000914.1	RFX5	ENCSR000ECF	H1	Homo sapiens	MA0510.3
BP000915.1	RFX5	ENCSR000EEA	HepG2	Homo sapiens	MA0510.3
BP000916.1	RFX5	ENCSR000EFD	IMR-90	Homo sapiens	MA0510.3
BP000917.1	RFX5	ENCSR000EGO	K562	Homo sapiens	MA0510.3
BP000919.1	RFX5	ENCSR064LJN	A549	Homo sapiens	MA0510.3
BP000920.1	RFX5	ENCSR924TVL	MCF-7	Homo sapiens	MA0510.3