Detailed information of deep learning profile BP000916.1

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This page shows detailed deep learning-derived predictions and motifs for RFX5 in IMR-90 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX5
Model ID: BP000916.1
Cell line/tissue: IMR-90
Class: Fork head/winged helix factors
Family: RFX-related factors
JASPAR ID: MA0510.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48382  
Source: ENCSR000EFD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.02 0.00 -0.00 -0.00 0.01 0.00 0.01 ]
C [ 0.00 0.00 -0.00 0.01 0.00 0.00 0.02 0.00 0.00 0.02 -0.00 -0.00 0.00 0.00 -0.00 0.06 0.01 0.00 -0.00 0.00 0.01 0.00 0.00 0.00 ]
G [ -0.00 0.00 0.01 -0.00 0.02 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.07 -0.00 -0.00 0.03 -0.00 0.00 0.00 0.02 0.04 0.00 0.00 0.01 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.01 0.00 0.01 -0.00 0.07 0.03 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 609 609 690 682 687 592 674 609 597 609 654 618 544 581 740 556 303 436 1461 284 195 747 96 28 253 646 38 93 1621 519 196 432 1120 847 1157 698 626 654 616 726 650 659 705 659 625 634 630 622 610 661 ]
C [ 625 618 597 621 613 646 644 628 667 640 585 734 536 470 785 561 360 1406 430 604 1338 181 21 88 393 50 2271 995 128 174 240 883 456 357 447 620 546 610 597 572 615 593 621 575 653 606 598 643 629 624 ]
G [ 667 696 689 694 642 718 607 681 663 676 743 553 643 925 501 1130 380 348 392 745 330 400 2403 41 120 1469 58 102 636 1336 1936 771 674 1024 503 546 617 632 746 716 697 682 653 687 673 619 689 637 721 697 ]
T [ 644 622 569 548 603 589 620 627 618 620 563 640 822 569 519 298 1502 355 262 912 682 1217 25 2388 1779 380 178 1355 160 516 173 459 295 317 438 681 756 649 586 531 583 611 566 624 594 686 628 643 585 563 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.01 -0.00 0.01 0.00 -0.01 0.00 0.04 -0.02 -0.02 0.01 0.00 -0.04 -0.00 0.03 -0.03 -0.05 0.04 0.01 -0.01 -0.01 0.02 0.01 0.02 0.00 0.00 0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.03 0.01 0.01 0.03 -0.00 0.02 0.04 0.00 -0.02 0.01 0.02 -0.04 0.07 0.03 -0.01 -0.00 0.01 0.03 0.01 0.01 0.00 0.00 0.01 0.01 ]
G [ 0.01 0.00 0.01 0.02 -0.00 0.04 -0.01 -0.00 0.02 0.02 -0.00 0.01 0.08 -0.02 -0.03 0.05 -0.01 0.01 0.03 0.04 0.04 0.01 0.02 0.03 0.01 0.00 0.00 0.01 ]
T [ -0.01 0.00 0.01 0.00 -0.01 -0.02 0.04 -0.00 -0.04 0.01 0.02 0.01 -0.03 0.07 0.04 -0.02 0.00 0.04 -0.03 -0.02 -0.02 0.00 -0.02 -0.02 -0.01 0.01 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1050

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 466

CWM

PFM

     

HCWM

7 profiles found for the same TF (RFX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000913.1 RFX5 ENCSR000DZW GM12878 Homo sapiens MA0510.3
BP000914.1 RFX5 ENCSR000ECF H1 Homo sapiens MA0510.3
BP000915.1 RFX5 ENCSR000EEA HepG2 Homo sapiens MA0510.3
BP000917.1 RFX5 ENCSR000EGO K562 Homo sapiens MA0510.3
BP000918.1 RFX5 ENCSR000EHY SK-N-SH Homo sapiens MA0510.3
BP000919.1 RFX5 ENCSR064LJN A549 Homo sapiens MA0510.3
BP000920.1 RFX5 ENCSR924TVL MCF-7 Homo sapiens MA0510.3
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