Detailed information of deep learning profile BP000885.1

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This page shows detailed deep learning-derived predictions and motifs for PAX5 in GM12892 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PAX5
Model ID: BP000885.1
Cell line/tissue: GM12892
Class: Paired box factors
Family: Paired domain only
JASPAR ID: MA0014.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02548  
Source: ENCSR000BJI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.03 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.03 0.00 0.04 -0.00 0.04 -0.00 0.01 0.01 -0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.03 -0.00 -0.00 0.00 -0.00 0.07 0.01 -0.00 -0.00 0.02 0.02 0.00 0.00 0.03 0.00 0.00 -0.00 -0.00 ]
T [ -0.00 -0.00 0.00 -0.00 0.00 0.02 0.01 -0.00 0.00 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.02 -0.00 -0.00 0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 950 728 760 883 714 923 695 747 713 863 712 741 719 709 743 740 254 316 74 2508 127 67 23 775 138 145 1380 345 206 760 1095 677 211 901 430 801 746 679 810 764 757 732 728 770 789 824 722 807 837 809 ]
C [ 1084 1227 1158 1067 1288 1091 1123 1097 1273 1089 1245 1183 1271 1059 1355 1130 130 900 2567 858 2750 7 2874 958 1544 1496 526 1822 663 266 1559 1391 1977 1257 1538 1019 1154 1241 1149 1166 1201 1165 1162 1085 1119 1067 1148 1169 1089 1080 ]
G [ 1093 1103 1011 1136 1089 1113 1280 1286 1096 1140 1159 1155 1029 1368 951 1353 2770 222 60 291 86 3823 978 236 178 1824 1852 984 633 2603 1037 711 290 540 845 1290 1294 1136 1024 1062 981 1034 1028 1093 1066 1155 1168 1034 1154 1218 ]
T [ 773 842 971 814 809 773 802 770 818 808 784 821 881 764 851 677 746 2462 1199 243 937 3 25 1931 2040 435 142 749 2398 271 209 1121 1422 1202 1087 790 706 844 917 908 961 969 982 952 926 854 862 890 820 793 ]

Hypothetical CWM

   
A [ 0.00 -0.01 -0.01 -0.01 -0.02 -0.01 -0.02 0.04 -0.02 0.01 -0.03 0.01 -0.02 -0.03 0.03 -0.01 -0.02 0.02 0.02 -0.00 -0.02 0.01 -0.01 -0.00 -0.00 ]
C [ 0.00 0.01 0.01 0.02 -0.02 0.01 0.04 0.01 0.06 -0.01 0.05 -0.00 0.03 0.03 -0.01 0.02 0.02 -0.03 0.03 0.01 0.03 0.01 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.05 -0.01 -0.02 0.00 -0.03 0.08 0.04 0.00 -0.03 0.04 0.04 0.02 -0.00 0.05 0.02 0.01 -0.01 -0.00 0.00 0.02 0.01 ]
T [ -0.01 -0.00 0.00 -0.01 0.01 0.03 0.03 -0.01 0.01 -0.06 -0.05 0.02 0.04 -0.01 -0.04 0.00 0.03 -0.02 -0.04 0.00 0.02 -0.00 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1116

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 782

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 492

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 445

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 310

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 186

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 115

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 40

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 33

CWM

PFM

     

HCWM

3 profiles found for the same TF (PAX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000882.1 PAX5 ENCSR000BHD GM12878 Homo sapiens MA0014.4
BP000883.1 PAX5 ENCSR000BHJ GM12878 Homo sapiens MA0014.4
BP000884.1 PAX5 ENCSR000BJH GM12891 Homo sapiens MA0014.4
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