Detailed information of deep learning profile BP000883.1

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This page shows detailed deep learning-derived predictions and motifs for PAX5 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PAX5
Model ID: BP000883.1
Cell line/tissue: GM12878
Class: Paired box factors
Family: Paired domain only
JASPAR ID: MA0014.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02548  
Source: ENCSR000BHJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.04 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 0.04 0.00 0.03 -0.00 0.05 -0.00 0.01 0.01 -0.00 0.01 0.00 -0.00 0.01 0.00 0.02 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.04 -0.00 -0.00 0.00 -0.00 0.09 0.01 -0.00 -0.00 0.03 0.02 0.00 -0.00 0.03 0.00 0.00 -0.00 -0.00 ]
T [ -0.00 0.00 0.00 -0.00 0.00 0.02 0.00 -0.00 0.01 0.00 -0.00 0.01 0.03 -0.00 -0.00 0.00 0.03 -0.00 -0.00 0.00 0.01 0.00 ]

Frequency matrix

       
A [ 1032 687 758 940 645 995 712 789 662 886 725 818 682 759 675 673 351 322 69 2515 155 185 7 916 74 54 1533 310 150 728 1314 686 98 936 371 754 656 707 883 745 707 726 663 698 786 817 667 879 733 846 ]
C [ 707 932 740 666 1026 722 699 694 947 680 921 736 929 660 1152 874 95 767 2445 379 1551 12 2589 732 572 1021 193 1610 323 38 1128 900 1549 819 1152 712 831 724 721 773 794 699 769 738 773 700 737 707 727 720 ]
G [ 756 749 697 804 695 758 1028 997 791 872 762 955 697 1106 593 892 2037 220 32 102 77 2995 587 110 25 1890 1420 838 137 2239 707 517 131 233 505 848 999 784 747 697 656 694 703 673 749 888 808 796 962 852 ]
T [ 697 824 997 782 826 717 753 712 792 754 784 683 884 667 772 753 709 1883 646 196 1409 0 9 1434 2521 227 46 434 2582 187 43 1089 1414 1204 1164 878 706 977 841 977 1035 1073 1057 1083 884 787 980 810 770 774 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.00 -0.01 -0.00 -0.02 0.05 -0.02 0.02 -0.03 0.01 -0.01 -0.02 0.04 -0.01 -0.02 0.02 0.02 -0.00 -0.03 0.01 -0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.02 -0.02 0.00 0.05 -0.01 0.07 -0.02 0.06 -0.00 0.04 0.04 0.00 0.03 0.02 -0.03 0.03 0.01 0.03 0.01 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.00 0.02 0.05 -0.01 -0.02 0.01 -0.04 0.09 0.05 0.01 -0.04 0.05 0.04 0.02 -0.01 0.05 0.02 0.01 -0.02 -0.01 -0.00 0.02 0.01 ]
T [ -0.00 0.00 0.00 -0.00 0.01 0.04 0.03 -0.01 0.02 -0.06 -0.04 0.03 0.04 -0.01 -0.04 0.01 0.03 -0.01 -0.04 0.01 0.02 0.01 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2411

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2086

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2068

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 948

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 894

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 851

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 675

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 577

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 568

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 510

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 459

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 343

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 287

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 242

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 35

CWM

PFM

     

HCWM

3 profiles found for the same TF (PAX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000882.1 PAX5 ENCSR000BHD GM12878 Homo sapiens MA0014.4
BP000884.1 PAX5 ENCSR000BJH GM12891 Homo sapiens MA0014.4
BP000885.1 PAX5 ENCSR000BJI GM12892 Homo sapiens MA0014.4
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