Detailed information of deep learning profile BP000885.1

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This page shows detailed deep learning-derived predictions and motifs for PAX5 in GM12892 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PAX5
Model ID: BP000885.1
Cell line/tissue: GM12892
Class: Paired box factors
Family: Paired domain only
JASPAR ID: MA0014.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02548  
Source: ENCSR000BJI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 0.00 -0.00 -0.00 0.02 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 0.00 -0.00 0.01 0.02 0.00 -0.00 0.00 -0.00 -0.00 ]
C [ -0.00 -0.00 0.00 0.00 0.03 0.00 0.00 0.02 0.02 -0.00 -0.00 0.01 0.07 -0.00 0.00 -0.00 -0.00 0.03 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.00 0.01 0.00 0.00 0.01 -0.00 0.01 0.01 -0.00 0.04 -0.00 0.04 0.00 0.03 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 793 820 890 862 854 926 952 982 969 961 908 917 844 706 790 1087 1202 1422 1121 209 271 2398 749 142 435 2040 1931 25 3 937 243 1199 2462 746 677 851 764 881 821 784 808 818 770 802 773 809 814 971 842 773 ]
C [ 1218 1154 1034 1168 1155 1066 1093 1028 1034 981 1062 1024 1136 1294 1290 845 540 290 711 1037 2603 633 984 1852 1824 178 236 978 3823 86 291 60 222 2770 1353 951 1368 1029 1155 1159 1140 1096 1286 1280 1113 1089 1136 1011 1103 1093 ]
G [ 1080 1089 1169 1148 1067 1119 1085 1162 1165 1201 1166 1149 1241 1154 1019 1538 1257 1977 1391 1559 266 663 1822 526 1496 1544 958 2874 7 2750 858 2567 900 130 1130 1355 1059 1271 1183 1245 1089 1273 1097 1123 1091 1288 1067 1158 1227 1084 ]
T [ 809 837 807 722 824 789 770 728 732 757 764 810 679 746 801 430 901 211 677 1095 760 206 345 1380 145 138 775 23 67 127 2508 74 316 254 740 743 709 719 741 712 863 713 747 695 923 714 883 760 728 950 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 -0.00 0.02 0.00 -0.04 -0.02 0.03 0.00 -0.04 -0.01 0.04 0.02 -0.05 -0.06 0.01 -0.01 0.03 0.03 0.01 -0.01 0.00 -0.00 -0.01 ]
C [ 0.01 0.02 0.00 -0.00 -0.01 0.01 0.02 0.05 -0.00 0.02 0.04 0.04 -0.03 0.00 0.04 0.08 -0.03 0.00 -0.02 -0.01 0.05 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.01 0.03 0.01 0.03 -0.03 0.02 0.02 -0.01 0.03 0.03 -0.00 0.05 -0.01 0.06 0.01 0.04 0.01 -0.02 0.02 0.01 0.01 0.00 ]
T [ -0.00 -0.00 -0.01 0.01 -0.02 -0.00 0.02 0.02 -0.02 -0.01 0.03 -0.03 -0.02 0.01 -0.03 0.01 -0.02 0.04 -0.02 -0.01 -0.02 -0.01 -0.01 -0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1116

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 782

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 492

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 445

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 310

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 186

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 115

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 40

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 33

CWM

PFM

     

HCWM

3 profiles found for the same TF (PAX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000882.1 PAX5 ENCSR000BHD GM12878 Homo sapiens MA0014.4
BP000883.1 PAX5 ENCSR000BHJ GM12878 Homo sapiens MA0014.4
BP000884.1 PAX5 ENCSR000BJH GM12891 Homo sapiens MA0014.4
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