Detailed information of deep learning profile BP000884.1

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This page shows detailed deep learning-derived predictions and motifs for PAX5 in GM12891 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PAX5
Model ID: BP000884.1
Cell line/tissue: GM12891
Class: Paired box factors
Family: Paired domain only
JASPAR ID: MA0014.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02548  
Source: ENCSR000BJH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 0.03 0.00 0.00 -0.00 0.07 -0.00 0.01 0.01 -0.00 0.01 0.00 -0.00 0.01 0.00 0.02 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.03 -0.00 -0.00 0.00 -0.00 0.10 0.00 0.00 -0.00 0.03 0.02 0.01 -0.00 0.04 0.00 0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 0.00 0.02 0.01 -0.00 0.01 0.00 -0.00 0.01 0.03 -0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 316 300 339 312 340 306 329 300 390 323 338 301 349 316 304 90 135 43 841 134 17 4 501 27 35 704 145 74 269 473 333 39 485 175 355 289 290 311 340 349 324 296 329 288 395 313 343 330 321 329 ]
C [ 352 345 280 351 315 304 295 338 309 343 293 363 278 359 293 56 275 798 289 16 3 1323 190 372 471 42 607 161 19 547 413 746 321 485 295 421 345 329 319 312 310 321 300 377 291 318 305 297 296 323 ]
G [ 314 301 319 280 332 335 331 358 315 319 363 316 402 311 367 789 131 29 72 80 1318 10 18 11 667 576 355 58 970 307 229 55 96 273 426 377 306 355 366 311 345 324 305 327 301 345 293 378 366 305 ]
T [ 356 392 400 395 351 393 383 342 324 353 344 358 309 352 374 403 797 468 136 1108 0 1 629 928 165 16 231 1045 80 11 363 498 436 405 262 251 397 343 313 366 359 397 404 346 351 362 397 333 355 381 ]

Hypothetical CWM

   
A [ 0.00 -0.01 -0.00 -0.01 -0.02 -0.01 -0.02 0.04 -0.02 0.02 -0.04 0.01 -0.03 -0.02 0.04 -0.01 -0.03 0.02 0.03 -0.00 -0.03 0.01 -0.01 -0.01 -0.00 ]
C [ 0.01 0.01 0.01 0.02 -0.02 0.01 0.05 0.01 0.08 -0.02 0.07 -0.00 0.05 0.04 -0.00 0.03 0.04 -0.03 0.04 0.01 0.04 0.01 0.03 0.01 0.01 ]
G [ 0.01 0.02 0.01 0.02 0.06 -0.01 -0.02 0.01 -0.04 0.10 0.05 0.01 -0.03 0.06 0.05 0.03 -0.02 0.06 0.03 0.02 -0.01 -0.01 -0.00 0.02 0.01 ]
T [ -0.01 -0.00 0.00 -0.00 0.01 0.03 0.03 -0.02 0.01 -0.07 -0.05 0.02 0.04 -0.02 -0.05 -0.01 0.04 -0.02 -0.05 0.01 0.02 0.00 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1453

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1151

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 649

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 571

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 472

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 290

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 164

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 27

CWM

PFM

     

HCWM

3 profiles found for the same TF (PAX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000882.1 PAX5 ENCSR000BHD GM12878 Homo sapiens MA0014.4
BP000883.1 PAX5 ENCSR000BHJ GM12878 Homo sapiens MA0014.4
BP000885.1 PAX5 ENCSR000BJI GM12892 Homo sapiens MA0014.4
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