Detailed information of deep learning profile BP000882.1

  1. Home
  2. Deep Learning Profile > BP000882.1
This page shows detailed deep learning-derived predictions and motifs for PAX5 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PAX5
Model ID: BP000882.1
Cell line/tissue: GM12878
Class: Paired box factors
Family: Paired domain only
JASPAR ID: MA0014.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02548  
Source: ENCSR000BHD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.04 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.04 0.00 0.04 -0.00 0.07 -0.00 0.00 0.01 -0.00 0.01 0.00 -0.00 0.01 0.00 0.02 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.01 0.00 0.00 0.03 -0.00 -0.00 0.00 -0.00 0.11 0.00 -0.00 -0.00 0.04 0.02 0.00 -0.00 0.04 0.01 0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 0.00 0.02 0.01 -0.00 0.01 0.00 -0.00 0.01 0.04 -0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.00 0.01 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1555 1006 1037 1464 987 1546 995 1072 966 1262 997 1139 981 1073 928 977 700 550 175 3301 253 8 19 1465 99 39 2536 484 191 1217 1990 951 145 1297 542 1093 984 966 1304 1143 999 997 942 1048 1221 1150 1048 1303 1141 1279 ]
C [ 1050 1317 1112 995 1581 1039 1037 1011 1449 1036 1461 1123 1347 977 1689 1409 205 1398 3127 728 2142 3 4152 1229 527 1530 205 2333 532 53 1436 1177 2127 1170 1569 1015 1167 1128 1084 1117 1081 1019 1119 1051 1102 1028 1067 1069 948 1047 ]
G [ 1099 1088 1009 1166 981 1120 1561 1601 1119 1343 1035 1373 1052 1669 954 1157 2455 458 106 305 151 4646 468 137 19 2968 1861 1235 179 3122 1166 838 227 355 753 1227 1519 1142 1007 969 945 1025 1022 969 1070 1321 1131 1122 1401 1233 ]
T [ 953 1246 1499 1032 1107 952 1064 973 1123 1016 1164 1022 1277 938 1086 1114 1297 2251 1249 323 2111 0 18 1826 4012 120 55 605 3755 265 65 1691 2158 1835 1793 1322 987 1421 1262 1428 1632 1616 1574 1589 1264 1158 1411 1163 1167 1098 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.01 -0.01 -0.02 -0.00 -0.02 0.05 -0.02 0.02 -0.03 0.02 -0.03 -0.03 0.05 -0.01 -0.03 0.02 0.03 -0.00 -0.03 0.01 -0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.02 -0.03 0.01 0.05 0.01 0.08 -0.02 0.08 -0.00 0.06 0.05 -0.01 0.03 0.03 -0.04 0.03 0.02 0.04 0.01 0.03 0.01 0.01 ]
G [ 0.01 0.02 0.01 0.02 0.06 -0.01 -0.02 0.01 -0.04 0.11 0.06 0.01 -0.05 0.06 0.05 0.03 -0.01 0.06 0.03 0.01 -0.02 -0.01 0.00 0.02 0.01 ]
T [ -0.00 -0.00 0.01 -0.00 0.01 0.04 0.04 -0.01 0.02 -0.07 -0.04 0.03 0.05 -0.01 -0.06 0.01 0.04 -0.02 -0.06 0.01 0.03 0.01 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2193

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1319

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1105

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1016

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 986

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 766

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 683

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 577

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 569

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 537

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 475

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 439

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 296

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 281

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 258

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 167

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 142

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 37

CWM

PFM

     

HCWM

3 profiles found for the same TF (PAX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000883.1 PAX5 ENCSR000BHJ GM12878 Homo sapiens MA0014.4
BP000884.1 PAX5 ENCSR000BJH GM12891 Homo sapiens MA0014.4
BP000885.1 PAX5 ENCSR000BJI GM12892 Homo sapiens MA0014.4
Showing 3 profiles of page 1 from 1 pages
  • 1 (current)