Detailed information of deep learning profile BP000884.1

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This page shows detailed deep learning-derived predictions and motifs for PAX5 in GM12891 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PAX5
Model ID: BP000884.1
Cell line/tissue: GM12891
Class: Paired box factors
Family: Paired domain only
JASPAR ID: MA0014.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02548  
Source: ENCSR000BJH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 -0.00 0.03 0.01 -0.00 0.00 0.01 -0.00 0.01 0.02 0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.01 -0.00 -0.00 -0.00 0.00 0.00 0.04 -0.00 0.01 0.02 0.03 -0.00 0.00 0.00 0.10 -0.00 0.00 -0.00 -0.00 0.03 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.02 0.00 0.01 -0.00 0.00 0.01 -0.00 0.01 0.01 -0.00 0.07 -0.00 0.00 0.00 0.03 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 381 355 333 397 362 351 346 404 397 359 366 313 343 397 251 262 405 436 498 363 11 80 1045 231 16 165 928 629 1 0 1108 136 468 797 403 374 352 309 358 344 353 324 342 383 393 351 395 400 392 356 ]
C [ 305 366 378 293 345 301 327 305 324 345 311 366 355 306 377 426 273 96 55 229 307 970 58 355 576 667 11 18 10 1318 80 72 29 131 789 367 311 402 316 363 319 315 358 331 335 332 280 319 301 314 ]
G [ 323 296 297 305 318 291 377 300 321 310 312 319 329 345 421 295 485 321 746 413 547 19 161 607 42 471 372 190 1323 3 16 289 798 275 56 293 359 278 363 293 343 309 338 295 304 315 351 280 345 352 ]
T [ 329 321 330 343 313 395 288 329 296 324 349 340 311 290 289 355 175 485 39 333 473 269 74 145 704 35 27 501 4 17 134 841 43 135 90 304 316 349 301 338 323 390 300 329 306 340 312 339 300 316 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.00 0.02 0.01 -0.05 -0.02 0.04 -0.01 -0.05 -0.02 0.04 0.02 -0.05 -0.07 0.01 -0.02 0.03 0.03 0.01 -0.00 0.00 -0.00 -0.01 ]
C [ 0.01 0.02 -0.00 -0.01 -0.01 0.02 0.03 0.06 -0.02 0.03 0.05 0.06 -0.03 0.01 0.05 0.10 -0.04 0.01 -0.02 -0.01 0.06 0.02 0.01 0.02 0.01 ]
G [ 0.01 0.01 0.03 0.01 0.04 0.01 0.04 -0.03 0.04 0.03 -0.00 0.04 0.05 -0.00 0.07 -0.02 0.08 0.01 0.05 0.01 -0.02 0.02 0.01 0.01 0.01 ]
T [ -0.00 -0.01 -0.01 0.01 -0.03 -0.00 0.03 0.02 -0.03 -0.01 0.04 -0.02 -0.03 0.01 -0.04 0.02 -0.02 0.04 -0.02 -0.01 -0.02 -0.01 -0.00 -0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1453

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1151

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 649

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 571

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 472

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 290

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 164

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 27

CWM

PFM

     

HCWM

3 profiles found for the same TF (PAX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000882.1 PAX5 ENCSR000BHD GM12878 Homo sapiens MA0014.4
BP000883.1 PAX5 ENCSR000BHJ GM12878 Homo sapiens MA0014.4
BP000885.1 PAX5 ENCSR000BJI GM12892 Homo sapiens MA0014.4
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