Detailed information of deep learning profile BP000883.1

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This page shows detailed deep learning-derived predictions and motifs for PAX5 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PAX5
Model ID: BP000883.1
Cell line/tissue: GM12878
Class: Paired box factors
Family: Paired domain only
JASPAR ID: MA0014.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02548  
Source: ENCSR000BHJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 0.00 -0.00 -0.00 0.03 0.00 -0.00 -0.00 0.03 0.01 -0.00 0.00 0.01 -0.00 0.00 0.02 0.00 -0.00 0.00 0.00 -0.00 ]
C [ -0.00 -0.00 0.00 0.00 0.03 -0.00 0.00 0.02 0.03 -0.00 -0.00 0.01 0.09 -0.00 0.00 -0.00 -0.00 0.04 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.02 0.00 0.01 -0.00 0.00 0.01 -0.00 0.01 0.01 -0.00 0.05 -0.00 0.03 0.00 0.04 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.04 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 774 770 810 980 787 884 1083 1057 1073 1035 977 841 977 706 878 1164 1204 1414 1089 43 187 2582 434 46 227 2521 1434 9 0 1409 196 646 1883 709 753 772 667 884 683 784 754 792 712 753 717 826 782 997 824 697 ]
C [ 852 962 796 808 888 749 673 703 694 656 697 747 784 999 848 505 233 131 517 707 2239 137 838 1420 1890 25 110 587 2995 77 102 32 220 2037 892 593 1106 697 955 762 872 791 997 1028 758 695 804 697 749 756 ]
G [ 720 727 707 737 700 773 738 769 699 794 773 721 724 831 712 1152 819 1549 900 1128 38 323 1610 193 1021 572 732 2589 12 1551 379 2445 767 95 874 1152 660 929 736 921 680 947 694 699 722 1026 666 740 932 707 ]
T [ 846 733 879 667 817 786 698 663 726 707 745 883 707 656 754 371 936 98 686 1314 728 150 310 1533 54 74 916 7 185 155 2515 69 322 351 673 675 759 682 818 725 886 662 789 712 995 645 940 758 687 1032 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.01 0.02 0.01 -0.04 -0.01 0.03 0.01 -0.04 -0.01 0.04 0.03 -0.04 -0.06 0.02 -0.01 0.03 0.04 0.01 -0.00 0.00 0.00 -0.00 ]
C [ 0.01 0.02 -0.00 -0.01 -0.02 0.01 0.02 0.05 -0.01 0.02 0.04 0.05 -0.04 0.01 0.05 0.09 -0.04 0.01 -0.02 -0.01 0.05 0.02 0.00 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.01 0.03 0.01 0.03 -0.03 0.02 0.03 0.00 0.04 0.04 -0.00 0.06 -0.02 0.07 -0.01 0.05 0.00 -0.02 0.02 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.01 0.01 -0.03 -0.00 0.02 0.02 -0.02 -0.01 0.04 -0.02 -0.01 0.01 -0.03 0.02 -0.02 0.05 -0.02 -0.00 -0.01 -0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2411

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2086

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2068

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 948

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 894

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 851

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 675

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 577

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 568

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 510

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 459

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 343

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 287

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 242

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 35

CWM

PFM

     

HCWM

3 profiles found for the same TF (PAX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000882.1 PAX5 ENCSR000BHD GM12878 Homo sapiens MA0014.4
BP000884.1 PAX5 ENCSR000BJH GM12891 Homo sapiens MA0014.4
BP000885.1 PAX5 ENCSR000BJI GM12892 Homo sapiens MA0014.4
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