Detailed information of deep learning profile BP000882.1

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This page shows detailed deep learning-derived predictions and motifs for PAX5 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PAX5
Model ID: BP000882.1
Cell line/tissue: GM12878
Class: Paired box factors
Family: Paired domain only
JASPAR ID: MA0014.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02548  
Source: ENCSR000BHD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.00 0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 -0.00 0.04 0.01 -0.00 0.00 0.01 -0.00 0.01 0.02 0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.01 -0.00 -0.00 -0.00 0.00 0.01 0.04 -0.00 0.00 0.02 0.04 -0.00 -0.00 0.00 0.11 -0.00 0.00 -0.00 -0.00 0.03 0.00 0.00 0.01 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.02 0.00 0.01 -0.00 0.00 0.01 -0.00 0.01 0.00 -0.00 0.07 -0.00 0.04 0.00 0.04 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.04 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1098 1167 1163 1411 1158 1264 1589 1574 1616 1632 1428 1262 1421 987 1322 1793 1835 2158 1691 65 265 3755 605 55 120 4012 1826 18 0 2111 323 1249 2251 1297 1114 1086 938 1277 1022 1164 1016 1123 973 1064 952 1107 1032 1499 1246 953 ]
C [ 1233 1401 1122 1131 1321 1070 969 1022 1025 945 969 1007 1142 1519 1227 753 355 227 838 1166 3122 179 1235 1861 2968 19 137 468 4646 151 305 106 458 2455 1157 954 1669 1052 1373 1035 1343 1119 1601 1561 1120 981 1166 1009 1088 1099 ]
G [ 1047 948 1069 1067 1028 1102 1051 1119 1019 1081 1117 1084 1128 1167 1015 1569 1170 2127 1177 1436 53 532 2333 205 1530 527 1229 4152 3 2142 728 3127 1398 205 1409 1689 977 1347 1123 1461 1036 1449 1011 1037 1039 1581 995 1112 1317 1050 ]
T [ 1279 1141 1303 1048 1150 1221 1048 942 997 999 1143 1304 966 984 1093 542 1297 145 951 1990 1217 191 484 2536 39 99 1465 19 8 253 3301 175 550 700 977 928 1073 981 1139 997 1262 966 1072 995 1546 987 1464 1037 1006 1555 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.01 0.03 0.01 -0.06 -0.02 0.04 0.01 -0.06 -0.01 0.05 0.03 -0.04 -0.07 0.02 -0.01 0.04 0.04 0.01 -0.00 0.01 -0.00 -0.00 ]
C [ 0.01 0.02 0.00 -0.01 -0.02 0.01 0.03 0.06 -0.01 0.03 0.05 0.06 -0.05 0.01 0.06 0.11 -0.04 0.01 -0.02 -0.01 0.06 0.02 0.01 0.02 0.01 ]
G [ 0.01 0.01 0.03 0.01 0.04 0.02 0.03 -0.04 0.03 0.03 -0.01 0.05 0.06 -0.00 0.08 -0.02 0.08 0.01 0.05 0.01 -0.03 0.02 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.01 0.01 -0.03 -0.00 0.03 0.02 -0.03 -0.01 0.05 -0.03 -0.03 0.02 -0.03 0.02 -0.02 0.05 -0.02 -0.00 -0.02 -0.01 -0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2193

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1319

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1105

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1016

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 986

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 766

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 683

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 577

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 569

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 537

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 475

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 439

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 296

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 281

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 258

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 167

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 142

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 37

CWM

PFM

     

HCWM

3 profiles found for the same TF (PAX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000883.1 PAX5 ENCSR000BHJ GM12878 Homo sapiens MA0014.4
BP000884.1 PAX5 ENCSR000BJH GM12891 Homo sapiens MA0014.4
BP000885.1 PAX5 ENCSR000BJI GM12892 Homo sapiens MA0014.4
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