Detailed information of deep learning profile BP000852.1

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This page shows detailed deep learning-derived predictions and motifs for NR2F1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2F1
Model ID: BP000852.1
Cell line/tissue: HepG2
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0017.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P10589  
Source: ENCSR662EOU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.01 0.01 0.03 -0.00 -0.00 -0.00 0.00 0.05 0.01 0.00 0.00 -0.00 ]
C [ 0.01 0.01 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.06 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 -0.00 0.00 0.00 0.06 0.05 -0.00 -0.00 0.00 -0.00 0.01 0.01 0.00 ]
T [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.05 0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1931 1831 2080 1958 1909 2410 1915 1948 2404 1852 1967 2212 1840 1778 1866 2021 2397 1836 1637 1512 1383 1922 3397 3648 6169 33 62 4 1 7987 3003 1861 1509 1856 1367 1989 1564 2337 1909 1927 1973 2445 1886 1820 1805 2321 1841 1959 2390 1876 ]
C [ 1941 2159 1839 2022 1990 1909 1893 1837 1904 2012 2379 1964 2504 2099 1921 1783 1671 1544 2244 2529 3107 3362 1916 661 5 1 1 101 8086 21 1814 1510 1369 2576 2601 1805 2481 1851 1819 2041 1966 2030 1961 2485 2198 1854 2014 1994 1920 1879 ]
G [ 2614 2248 2553 2580 2598 2195 2696 2742 2184 2101 2085 2409 2190 2106 2181 2852 2704 3388 2817 2567 1994 1571 1783 3506 2049 8191 7866 92 28 209 2385 3757 4021 1975 2084 2755 2335 2258 2888 1924 2699 2052 2690 2097 2175 2373 2173 2648 2168 2252 ]
T [ 1748 1996 1762 1674 1737 1720 1730 1707 1742 2269 1803 1649 1700 2251 2266 1578 1462 1466 1536 1626 1750 1379 1138 419 11 9 305 8037 119 17 1032 1106 1335 1827 2182 1685 1854 1788 1618 2342 1596 1707 1697 1832 2056 1686 2206 1633 1756 2227 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.02 0.02 0.04 -0.01 -0.01 -0.04 -0.04 0.05 0.02 0.00 -0.01 -0.00 ]
C [ 0.01 0.02 0.02 0.01 -0.01 -0.03 -0.02 -0.04 0.00 0.06 -0.02 0.00 0.01 -0.00 0.01 ]
G [ 0.01 0.01 0.00 -0.00 0.01 0.03 0.06 0.05 -0.00 -0.02 0.02 0.00 0.02 0.02 0.01 ]
T [ -0.00 0.00 -0.00 -0.00 -0.01 -0.04 -0.02 0.01 0.05 0.01 -0.03 -0.01 -0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4071

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1406

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1383

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 720

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 708

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 705

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 322

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 299

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 55

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 42

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 30

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 27

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 25

CWM

PFM

     

HCWM

3 profiles found for the same TF (NR2F1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000850.1 NR2F1 ENCSR136OFY HepG2 Homo sapiens MA0017.3
BP000851.1 NR2F1 ENCSR514VYD GM12878 Homo sapiens MA0017.3
BP000853.1 NR2F1 ENCSR970NKQ K562 Homo sapiens MA0017.3
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