Detailed information of deep learning profile BP000850.1

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This page shows detailed deep learning-derived predictions and motifs for NR2F1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2F1
Model ID: BP000850.1
Cell line/tissue: HepG2
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0017.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P10589  
Source: ENCSR136OFY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.01 0.01 0.02 -0.00 -0.00 -0.00 0.00 0.04 0.01 0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.04 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 -0.00 0.00 0.00 0.05 0.04 -0.00 -0.00 0.00 -0.00 0.01 0.01 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.04 0.00 -0.00 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 2548 2519 2773 2557 2616 3154 2511 2610 3080 2449 2620 2916 2414 2416 2448 2729 3267 2554 2310 1921 1819 2514 4166 4653 7718 44 117 16 7 10253 4164 2506 1959 2506 1868 2791 2082 2984 2528 2471 2570 3222 2514 2367 2384 2908 2357 2596 3176 2456 ]
C [ 2384 2588 2348 2422 2370 2317 2315 2307 2363 2441 2915 2490 3038 2569 2438 2230 2113 1908 2649 3245 3834 4038 2581 861 14 1 7 254 10258 56 2187 1782 1623 3077 3359 2190 2995 2422 2258 2466 2549 2500 2514 3071 2640 2303 2535 2502 2429 2471 ]
G [ 3283 2825 3166 3296 3301 2718 3423 3433 2814 2658 2622 3007 2816 2620 2719 3455 3268 4233 3493 3278 2696 1926 2325 4388 2801 10478 9854 112 33 221 2826 4877 5277 2492 2521 3385 2850 2721 3562 2458 3356 2486 3314 2675 2805 2964 2633 3298 2667 2713 ]
T [ 2341 2624 2269 2281 2269 2367 2307 2206 2299 3008 2399 2143 2288 2951 2951 2142 1908 1861 2104 2112 2207 2078 1484 654 23 33 578 10174 258 26 1379 1391 1697 2481 2808 2190 2629 2429 2208 3161 2081 2348 2214 2443 2727 2381 3031 2160 2284 2916 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.01 0.01 0.03 -0.01 -0.02 -0.04 -0.03 0.04 0.02 0.00 -0.01 -0.00 ]
C [ 0.00 0.01 0.01 0.00 -0.01 -0.02 -0.02 -0.03 -0.00 0.04 -0.02 0.00 0.00 -0.00 0.00 ]
G [ 0.01 0.01 0.00 -0.00 0.01 0.02 0.05 0.04 -0.00 -0.01 0.01 -0.00 0.01 0.02 0.01 ]
T [ -0.00 0.00 -0.00 -0.00 -0.01 -0.03 -0.02 0.01 0.04 0.00 -0.03 -0.01 -0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5889

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2298

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1126

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1088

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1037

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 607

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 499

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 280

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 277

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 188

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 65

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 54

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 36

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 29

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 26

CWM

PFM

     

HCWM

3 profiles found for the same TF (NR2F1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000851.1 NR2F1 ENCSR514VYD GM12878 Homo sapiens MA0017.3
BP000852.1 NR2F1 ENCSR662EOU HepG2 Homo sapiens MA0017.3
BP000853.1 NR2F1 ENCSR970NKQ K562 Homo sapiens MA0017.3
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