Detailed information of deep learning profile BP000852.1

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This page shows detailed deep learning-derived predictions and motifs for NR2F1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2F1
Model ID: BP000852.1
Cell line/tissue: HepG2
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0017.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P10589  
Source: ENCSR662EOU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.05 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.00 -0.00 -0.00 0.05 0.06 0.00 0.00 -0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.06 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.01 0.01 ]
T [ -0.00 0.00 0.00 0.01 0.05 0.00 -0.00 -0.00 -0.00 0.03 0.01 0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 2227 1756 1633 2206 1686 2056 1832 1697 1707 1596 2342 1618 1788 1854 1685 2182 1827 1335 1106 1032 17 119 8037 305 9 11 419 1138 1379 1750 1626 1536 1466 1462 1578 2266 2251 1700 1649 1803 2269 1742 1707 1730 1720 1737 1674 1762 1996 1748 ]
C [ 2252 2168 2648 2173 2373 2175 2097 2690 2052 2699 1924 2888 2258 2335 2755 2084 1975 4021 3757 2385 209 28 92 7866 8191 2049 3506 1783 1571 1994 2567 2817 3388 2704 2852 2181 2106 2190 2409 2085 2101 2184 2742 2696 2195 2598 2580 2553 2248 2614 ]
G [ 1879 1920 1994 2014 1854 2198 2485 1961 2030 1966 2041 1819 1851 2481 1805 2601 2576 1369 1510 1814 21 8086 101 1 1 5 661 1916 3362 3107 2529 2244 1544 1671 1783 1921 2099 2504 1964 2379 2012 1904 1837 1893 1909 1990 2022 1839 2159 1941 ]
T [ 1876 2390 1959 1841 2321 1805 1820 1886 2445 1973 1927 1909 2337 1564 1989 1367 1856 1509 1861 3003 7987 1 4 62 33 6169 3648 3397 1922 1383 1512 1637 1836 2397 2021 1866 1778 1840 2212 1967 1852 2404 1948 1915 2410 1909 1958 2080 1831 1931 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.01 -0.01 -0.03 0.01 0.05 0.01 -0.02 -0.04 -0.01 -0.00 -0.00 0.00 -0.00 ]
C [ 0.01 0.02 0.02 0.00 0.02 -0.02 -0.00 0.05 0.06 0.03 0.01 -0.00 0.00 0.01 0.01 ]
G [ 0.01 -0.00 0.01 0.00 -0.02 0.06 0.00 -0.04 -0.02 -0.03 -0.01 0.01 0.02 0.02 0.01 ]
T [ -0.00 -0.01 0.00 0.02 0.05 -0.04 -0.04 -0.01 -0.01 0.04 0.02 0.02 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4071

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1406

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1383

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 720

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 708

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 705

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 322

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 299

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 55

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 42

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 30

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 27

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 25

CWM

PFM

     

HCWM

3 profiles found for the same TF (NR2F1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000850.1 NR2F1 ENCSR136OFY HepG2 Homo sapiens MA0017.3
BP000851.1 NR2F1 ENCSR514VYD GM12878 Homo sapiens MA0017.3
BP000853.1 NR2F1 ENCSR970NKQ K562 Homo sapiens MA0017.3
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