Detailed information of deep learning profile BP000851.1

  1. Home
  2. Deep Learning Profile > BP000851.1
This page shows detailed deep learning-derived predictions and motifs for NR2F1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2F1
Model ID: BP000851.1
Cell line/tissue: GM12878
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0017.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P10589  
Source: ENCSR514VYD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.01 0.00 0.00 -0.00 0.00 0.00 0.00 0.04 0.04 0.00 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.03 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.00 0.03 0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3456 4971 3688 3660 3693 3528 3474 3521 3371 3763 3482 3260 3563 5216 4901 2992 2659 2233 2160 44 462 16447 165 100 48 1126 4278 3794 3540 3541 3200 4249 3017 3496 3424 4125 3244 3430 3336 3985 3463 3296 3536 3424 3767 3526 3379 3501 3405 3470 ]
C [ 5831 4392 4327 4232 5548 4087 4183 3841 4022 5549 4705 5134 4298 4334 4678 6591 6040 6623 6030 425 202 249 16642 16682 5266 7920 2530 3220 3806 4431 4395 5126 5304 6049 6063 4781 5681 5216 5162 4502 5321 5882 4531 5165 4881 4461 5373 5622 4535 5485 ]
G [ 3844 3909 5319 5288 3958 4064 5630 5597 4227 4048 3669 3589 5408 4381 4232 3917 3142 2871 4105 13 16154 124 0 2 26 1693 4066 6614 6524 4496 5065 3681 3453 3526 3559 4241 3849 4155 4083 4553 3924 3726 3931 4031 4358 4886 3827 3861 3995 4057 ]
T [ 3690 3549 3487 3641 3622 5142 3534 3862 5201 3461 4965 4838 3552 2890 3010 3321 4980 5094 4526 16339 3 1 14 37 11481 6082 5947 3193 2951 4353 4161 3765 5047 3750 3775 3674 4047 4020 4240 3781 4113 3917 4823 4201 3815 3948 4242 3837 4886 3809 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.01 -0.00 -0.02 0.00 0.03 -0.00 -0.01 -0.03 -0.01 -0.00 0.00 0.00 -0.00 ]
C [ 0.01 0.01 0.00 -0.00 0.01 0.00 0.00 0.04 0.04 0.02 0.01 -0.00 0.00 0.00 0.01 ]
G [ 0.00 0.00 0.00 0.01 -0.02 0.03 0.00 -0.03 -0.02 -0.01 -0.00 0.00 0.01 0.01 0.00 ]
T [ -0.00 -0.00 0.00 0.01 0.03 -0.04 -0.04 -0.01 -0.02 0.02 0.01 0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4302

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2693

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2183

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 2170

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1081

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1029

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 731

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 532

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 520

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 512

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 416

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 350

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 293

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 242

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 223

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 65

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 65

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_20

Num. of seqlets: 43

CWM

PFM

     

HCWM

3 profiles found for the same TF (NR2F1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000850.1 NR2F1 ENCSR136OFY HepG2 Homo sapiens MA0017.3
BP000852.1 NR2F1 ENCSR662EOU HepG2 Homo sapiens MA0017.3
BP000853.1 NR2F1 ENCSR970NKQ K562 Homo sapiens MA0017.3
Showing 3 profiles of page 1 from 1 pages
  • 1 (current)