Detailed information of deep learning profile BP000849.1

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This page shows detailed deep learning-derived predictions and motifs for PKNOX1 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PKNOX1
Model ID: BP000849.1
Cell line/tissue: MCF-7
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA0782.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55347  
Source: ENCSR986XYK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 0.00 -0.00 0.00 0.07 -0.00 -0.00 -0.00 0.04 -0.00 0.03 -0.00 -0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.07 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.06 0.00 -0.00 -0.00 0.08 0.01 -0.00 0.00 0.02 0.01 -0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.00 0.03 -0.00 -0.00 0.01 0.04 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 3815 3690 3892 3955 3806 3895 3774 3667 3674 3862 4067 3779 3742 3946 3870 4319 4086 3321 4007 1801 172 15248 938 1137 54 11421 85 12476 987 2824 2706 3657 3817 4182 3719 3853 4050 3912 3547 3707 4394 4165 3889 3711 4026 4056 4123 4088 4048 4074 ]
C [ 3528 3786 3643 3615 3856 3708 3809 3597 3639 3727 3620 3860 3652 3703 3966 3560 3541 3583 3017 268 114 45 3129 196 16 74 14185 125 2255 4718 3915 3883 3833 3217 3281 3604 3517 3356 4414 4234 3590 3706 3680 3903 3756 3808 3588 3428 3611 3494 ]
G [ 4223 4083 4398 3904 3898 3998 4171 4133 4472 4043 4117 3984 3954 4146 4216 3964 4318 4202 3930 961 15094 76 4602 1393 15128 3847 32 1931 9869 5731 3309 4685 4226 4480 4598 4287 4372 4265 3827 3736 3952 3823 3774 3997 3948 3882 3937 4155 3943 4078 ]
T [ 3875 3882 3508 3967 3881 3840 3687 4044 3656 3809 3637 3818 4093 3646 3389 3598 3496 4335 4487 12411 61 72 6772 12715 243 99 1139 909 2330 2168 5511 3216 3565 3562 3843 3697 3502 3908 3653 3764 3505 3747 4098 3830 3711 3695 3793 3770 3839 3795 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 0.00 -0.01 0.00 0.07 -0.03 -0.01 -0.02 0.06 -0.03 0.04 -0.01 -0.00 -0.01 0.00 ]
C [ 0.01 0.01 0.00 -0.00 -0.00 -0.04 -0.03 0.02 -0.00 -0.05 -0.05 0.07 -0.03 0.01 0.01 0.02 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.02 0.06 -0.02 0.00 -0.02 0.08 0.02 -0.05 0.02 0.03 0.02 0.00 0.01 ]
T [ 0.00 0.00 0.00 0.01 0.04 -0.02 -0.02 0.03 0.05 -0.02 -0.04 0.01 -0.01 0.00 -0.00 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3797

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3667

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2968

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 642

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 322

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 245

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 121

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 87

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 56

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 38

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 20

CWM

PFM

     

HCWM

3 profiles found for the same TF (PKNOX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000846.1 PKNOX1 ENCSR115SMW K562 Homo sapiens MA0782.3
BP000847.1 PKNOX1 ENCSR233FAG HEK293T Homo sapiens MA0782.3
BP000848.1 PKNOX1 ENCSR711XNY GM12878 Homo sapiens MA0782.3
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