Detailed information of deep learning profile BP000848.1

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This page shows detailed deep learning-derived predictions and motifs for PKNOX1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PKNOX1
Model ID: BP000848.1
Cell line/tissue: GM12878
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA0782.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55347  
Source: ENCSR711XNY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.06 0.01 -0.00 -0.00 0.04 0.00 0.00 -0.00 0.00 ]
C [ 0.00 -0.00 0.01 0.02 0.00 -0.00 0.00 0.10 -0.00 0.00 0.00 0.07 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.09 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.04 -0.00 0.06 -0.00 -0.00 -0.00 0.08 0.00 -0.00 0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 2907 3000 2969 2877 3007 2965 2989 3233 2941 3242 2649 3142 2973 3236 2808 2931 2945 2745 2663 2568 3739 1876 1837 919 30 62 7 10438 4456 28 13 9677 3357 3694 2689 2837 2697 2910 3333 2930 2821 2839 2780 3326 2866 2912 3021 2995 2853 3245 ]
C [ 2981 2978 2999 3051 2876 2876 2879 2960 2852 2815 3287 2835 2827 2922 3232 3144 3661 3316 3358 3552 2880 4133 7303 1066 6 2801 11895 876 4733 35 11833 541 3081 2963 3423 2865 3004 3123 3095 2935 3008 2887 3473 3024 3111 2950 2902 2929 3391 2972 ]
G [ 2702 2704 2637 2640 2693 2848 3030 2776 2987 2808 2755 3027 3369 2783 3031 2480 2447 2327 2776 3076 3130 3447 2022 59 11852 12 6 188 1956 16 33 164 2807 2821 2918 2696 3365 2932 2690 3103 2737 3138 2787 2724 3066 2674 3059 3022 2658 2841 ]
T [ 3344 3252 3329 3366 3358 3245 3036 2965 3154 3069 3243 2930 2765 2993 2863 3379 2881 3546 3137 2738 2185 2478 772 9890 46 9059 26 432 789 11855 55 1552 2689 2456 2904 3536 2868 2969 2816 2966 3368 3070 2894 2860 2891 3398 2952 2988 3032 2876 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 -0.00 -0.00 -0.02 0.00 -0.04 -0.03 0.06 0.03 -0.03 -0.03 0.05 0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.00 0.02 0.03 0.03 -0.05 0.02 0.10 -0.03 0.01 -0.02 0.07 -0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.01 -0.05 0.09 -0.07 -0.05 -0.00 0.01 -0.04 -0.04 -0.01 -0.01 0.00 0.01 0.01 ]
T [ 0.00 -0.00 -0.01 -0.01 -0.02 0.04 -0.03 0.07 -0.02 -0.02 -0.03 0.08 0.00 -0.01 0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3790

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2435

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1976

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1440

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 575

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 287

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 245

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 217

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 175

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 129

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 86

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 39

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 26

CWM

PFM

     

HCWM

3 profiles found for the same TF (PKNOX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000846.1 PKNOX1 ENCSR115SMW K562 Homo sapiens MA0782.3
BP000847.1 PKNOX1 ENCSR233FAG HEK293T Homo sapiens MA0782.3
BP000849.1 PKNOX1 ENCSR986XYK MCF-7 Homo sapiens MA0782.3
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