Detailed information of deep learning profile BP000846.1

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This page shows detailed deep learning-derived predictions and motifs for PKNOX1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PKNOX1
Model ID: BP000846.1
Cell line/tissue: K562
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA0782.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55347  
Source: ENCSR115SMW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 -0.00 0.00 0.08 -0.00 -0.00 -0.00 0.06 -0.00 0.04 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.07 0.00 0.00 -0.00 0.10 0.00 -0.00 0.00 0.02 0.01 -0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.00 0.04 -0.00 -0.00 0.01 0.05 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 2787 2457 2841 2681 2580 3246 2506 2590 2556 2584 3332 2622 2535 2638 2557 3437 2720 2263 2740 1294 165 10453 757 356 14 8833 13 9302 678 2391 1846 2546 2747 3426 2654 3120 2594 2758 2370 2593 3032 2860 2639 2590 2847 3211 3234 3354 3229 3224 ]
C [ 2198 2781 2296 2830 2855 2264 2801 2250 2362 2930 2242 2880 2163 2812 3035 2277 2217 2705 2368 125 68 32 1712 104 2 11 10501 37 1486 3123 2722 2840 2390 1985 2108 2161 2743 2317 3151 2738 2237 2352 2755 2445 2658 2367 2312 2118 2225 2219 ]
G [ 2915 2570 2995 2402 2437 2468 2645 2569 3254 2515 2456 2510 2649 2590 2597 2499 3243 2683 2616 498 10307 58 3828 829 10561 1710 2 764 6987 3465 2742 2902 3118 2843 3214 2679 2762 2553 2445 2369 2908 2446 2428 2534 2548 2505 2485 2551 2584 2558 ]
T [ 2693 2785 2461 2680 2721 2615 2641 3184 2421 2564 2563 2581 3246 2553 2404 2380 2413 2942 2869 8676 53 50 4296 9304 16 39 77 490 1442 1614 3283 2305 2338 2339 2617 2633 2494 2965 2627 2893 2416 2935 2771 3024 2540 2510 2562 2570 2555 2592 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.01 -0.01 0.00 0.08 -0.03 -0.02 -0.02 0.07 -0.04 0.04 -0.01 -0.01 -0.01 0.00 ]
C [ 0.01 0.01 0.01 -0.00 -0.00 -0.04 -0.04 0.02 -0.01 -0.06 -0.07 0.09 -0.05 0.01 0.02 0.02 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.02 0.07 -0.03 0.01 -0.02 0.10 0.01 -0.05 0.03 0.04 0.02 0.00 0.01 ]
T [ 0.00 -0.00 0.00 0.01 0.04 -0.02 -0.03 0.03 0.05 -0.02 -0.03 0.01 -0.02 -0.00 -0.00 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6893

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 5785

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2663

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1250

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 888

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 478

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 462

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 276

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 240

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 238

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 237

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 124

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 99

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 83

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 66

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 58

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_21

Num. of seqlets: 50

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_22

Num. of seqlets: 44

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_24

Num. of seqlets: 37

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_25

Num. of seqlets: 30

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_26

Num. of seqlets: 27

CWM

PFM

     

HCWM

3 profiles found for the same TF (PKNOX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000847.1 PKNOX1 ENCSR233FAG HEK293T Homo sapiens MA0782.3
BP000848.1 PKNOX1 ENCSR711XNY GM12878 Homo sapiens MA0782.3
BP000849.1 PKNOX1 ENCSR986XYK MCF-7 Homo sapiens MA0782.3
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