Detailed information of deep learning profile BP000849.1

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This page shows detailed deep learning-derived predictions and motifs for PKNOX1 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PKNOX1
Model ID: BP000849.1
Cell line/tissue: MCF-7
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA0782.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55347  
Source: ENCSR986XYK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.04 0.01 -0.00 -0.00 0.03 0.00 0.00 -0.00 0.00 ]
C [ 0.00 -0.00 0.01 0.02 0.00 -0.00 0.01 0.08 -0.00 -0.00 0.00 0.06 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.07 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 -0.00 -0.00 0.03 -0.00 0.04 -0.00 -0.00 -0.00 0.07 0.00 -0.00 0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 3795 3839 3770 3793 3695 3711 3830 4098 3747 3505 3764 3653 3908 3502 3697 3843 3562 3565 3216 5511 2168 2330 909 1139 99 243 12715 6772 72 61 12411 4487 4335 3496 3598 3389 3646 4093 3818 3637 3809 3656 4044 3687 3840 3881 3967 3508 3882 3875 ]
C [ 4078 3943 4155 3937 3882 3948 3997 3774 3823 3952 3736 3827 4265 4372 4287 4598 4480 4226 4685 3309 5731 9869 1931 32 3847 15128 1393 4602 76 15094 961 3930 4202 4318 3964 4216 4146 3954 3984 4117 4043 4472 4133 4171 3998 3898 3904 4398 4083 4223 ]
G [ 3494 3611 3428 3588 3808 3756 3903 3680 3706 3590 4234 4414 3356 3517 3604 3281 3217 3833 3883 3915 4718 2255 125 14185 74 16 196 3129 45 114 268 3017 3583 3541 3560 3966 3703 3652 3860 3620 3727 3639 3597 3809 3708 3856 3615 3643 3786 3528 ]
T [ 4074 4048 4088 4123 4056 4026 3711 3889 4165 4394 3707 3547 3912 4050 3853 3719 4182 3817 3657 2706 2824 987 12476 85 11421 54 1137 938 15248 172 1801 4007 3321 4086 4319 3870 3946 3742 3779 4067 3862 3674 3667 3774 3895 3806 3955 3892 3690 3815 ]

Hypothetical CWM

   
A [ -0.00 0.01 -0.00 0.00 -0.01 0.01 -0.04 -0.02 0.05 0.03 -0.02 -0.02 0.04 0.01 0.00 0.00 0.00 ]
C [ 0.01 0.00 0.02 0.03 0.02 -0.05 0.02 0.08 -0.02 0.00 -0.02 0.06 -0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.02 0.01 0.01 -0.03 0.07 -0.05 -0.05 -0.00 0.02 -0.03 -0.04 -0.00 -0.00 0.00 0.01 0.01 ]
T [ 0.00 -0.01 -0.00 -0.01 0.04 -0.03 0.06 -0.02 -0.01 -0.03 0.07 0.00 -0.01 0.00 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3797

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3667

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2968

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 642

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 322

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 245

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 121

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 87

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 56

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 38

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 20

CWM

PFM

     

HCWM

3 profiles found for the same TF (PKNOX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000846.1 PKNOX1 ENCSR115SMW K562 Homo sapiens MA0782.3
BP000847.1 PKNOX1 ENCSR233FAG HEK293T Homo sapiens MA0782.3
BP000848.1 PKNOX1 ENCSR711XNY GM12878 Homo sapiens MA0782.3
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