Detailed information of deep learning profile BP000847.1

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This page shows detailed deep learning-derived predictions and motifs for PKNOX1 in HEK293T using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PKNOX1
Model ID: BP000847.1
Cell line/tissue: HEK293T
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA0782.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55347  
Source: ENCSR233FAG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.04 0.01 -0.00 -0.00 0.03 0.00 0.00 -0.00 0.00 ]
C [ 0.00 -0.00 0.00 0.02 0.00 -0.00 0.00 0.07 -0.00 0.00 0.00 0.05 -0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.06 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.03 -0.00 0.05 -0.00 -0.00 -0.00 0.06 0.00 -0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 2531 2496 2455 2412 2329 2457 2578 2529 2550 2281 2595 2471 2628 2295 2397 2570 2260 2306 2278 3432 1388 1261 311 30 14 16 8261 4610 18 53 8050 3287 2903 2275 2173 2256 2487 2814 2419 2402 2403 2310 2713 2365 2399 2453 2480 2332 2528 2462 ]
C [ 2085 2057 2076 2063 2130 2072 2120 1973 2022 2296 2021 1983 2153 2278 2158 2360 2177 2410 2439 1814 3116 6378 503 5 1534 9116 477 2720 25 8920 286 1913 2081 2472 2041 2037 2089 2051 2051 2029 2148 2465 2145 2175 2071 2090 2006 2324 2097 2263 ]
G [ 1844 1841 1827 1932 1956 2041 2009 2180 1970 1922 2153 2386 1919 2062 1831 1737 1718 1938 2128 2352 2878 1160 15 9095 9 1 50 1415 8 50 77 1478 2007 1817 1840 2277 2076 1799 2151 1920 2158 1897 1921 2175 1902 2197 2138 1911 2088 1840 ]
T [ 2679 2745 2781 2732 2724 2569 2432 2457 2597 2640 2370 2299 2439 2504 2753 2472 2984 2485 2294 1541 1757 340 8310 9 7582 6 351 394 9088 116 726 2461 2148 2575 3085 2569 2487 2475 2518 2788 2430 2467 2360 2424 2767 2399 2515 2572 2426 2574 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.01 -0.00 0.00 -0.01 0.01 -0.04 -0.00 0.04 0.03 -0.03 -0.01 0.03 0.01 0.00 0.00 0.00 ]
C [ 0.01 0.01 0.00 0.02 0.03 0.03 -0.04 0.02 0.07 -0.02 0.00 -0.02 0.05 -0.02 0.00 0.01 0.01 0.00 ]
G [ 0.00 0.01 0.02 0.01 0.01 -0.03 0.06 -0.05 -0.04 -0.00 0.01 -0.03 -0.04 -0.01 -0.01 0.00 0.01 0.00 ]
T [ 0.00 0.00 -0.01 -0.00 -0.01 0.03 -0.02 0.05 -0.01 -0.01 -0.02 0.06 0.01 -0.00 0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 12295

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3840

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2176

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1937

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 707

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 358

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 209

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 170

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 168

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 166

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 157

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 155

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 105

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 72

CWM

PFM

     

HCWM

3 profiles found for the same TF (PKNOX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000846.1 PKNOX1 ENCSR115SMW K562 Homo sapiens MA0782.3
BP000848.1 PKNOX1 ENCSR711XNY GM12878 Homo sapiens MA0782.3
BP000849.1 PKNOX1 ENCSR986XYK MCF-7 Homo sapiens MA0782.3
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