Detailed information of deep learning profile BP000848.1

This page shows detailed deep learning-derived predictions and motifs for PKNOX1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PKNOX1
Model ID: BP000848.1
Cell line/tissue: GM12878
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA0782.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55347  
Source: ENCSR711XNY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 0.00 0.00 0.00 -0.00 0.00 0.08 -0.00 -0.00 -0.00 0.06 -0.00 0.04 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.09 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.07 0.00 0.00 -0.00 0.10 0.00 -0.00 0.00 0.02 0.01 -0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.00 0.04 -0.00 -0.00 0.01 0.06 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

A [ 2876 3032 2988 2952 3398 2891 2860 2894 3070 3368 2966 2816 2969 2868 3536 2904 2456 2689 1552 55 11855 789 432 26 9059 46 9890 772 2478 2185 2738 3137 3546 2881 3379 2863 2993 2765 2930 3243 3069 3154 2965 3036 3245 3358 3366 3329 3252 3344 ]
C [ 2841 2658 3022 3059 2674 3066 2724 2787 3138 2737 3103 2690 2932 3365 2696 2918 2821 2807 164 33 16 1956 188 6 12 11852 59 2022 3447 3130 3076 2776 2327 2447 2480 3031 2783 3369 3027 2755 2808 2987 2776 3030 2848 2693 2640 2637 2704 2702 ]
G [ 2972 3391 2929 2902 2950 3111 3024 3473 2887 3008 2935 3095 3123 3004 2865 3423 2963 3081 541 11833 35 4733 876 11895 2801 6 1066 7303 4133 2880 3552 3358 3316 3661 3144 3232 2922 2827 2835 3287 2815 2852 2960 2879 2876 2876 3051 2999 2978 2981 ]
T [ 3245 2853 2995 3021 2912 2866 3326 2780 2839 2821 2930 3333 2910 2697 2837 2689 3694 3357 9677 13 28 4456 10438 7 62 30 919 1837 1876 3739 2568 2663 2745 2945 2931 2808 3236 2973 3142 2649 3242 2941 3233 2989 2965 3007 2877 2969 3000 2907 ]

Hypothetical CWM

A [ 0.00 0.00 0.00 0.01 -0.01 0.00 0.08 -0.03 -0.02 -0.02 0.07 -0.03 0.04 -0.02 -0.01 -0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.00 -0.01 -0.01 -0.04 -0.04 0.01 -0.00 -0.05 -0.07 0.09 -0.05 0.01 0.02 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.03 0.07 -0.02 0.01 -0.03 0.10 0.02 -0.05 0.03 0.03 0.02 0.00 0.01 0.01 ]
T [ 0.00 -0.00 0.01 0.01 0.05 -0.03 -0.03 0.03 0.06 -0.03 -0.04 0.00 -0.02 -0.00 -0.00 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3790

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2435

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1976

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1440

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 575

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 287

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 245

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 217

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 175

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 129

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 86

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 39

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 26

3 profiles found for the same TF (PKNOX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000846.1 PKNOX1 ENCSR115SMW K562 Homo sapiens MA0782.3
BP000847.1 PKNOX1 ENCSR233FAG HEK293T Homo sapiens MA0782.3
BP000849.1 PKNOX1 ENCSR986XYK MCF-7 Homo sapiens MA0782.3
Showing 3 profiles of page 1 from 1 pages
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