Detailed information of deep learning profile BP000847.1

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This page shows detailed deep learning-derived predictions and motifs for PKNOX1 in HEK293T using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PKNOX1
Model ID: BP000847.1
Cell line/tissue: HEK293T
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA0782.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55347  
Source: ENCSR233FAG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.06 -0.00 -0.00 -0.00 0.05 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.06 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 0.05 0.00 0.00 -0.00 0.07 0.00 -0.00 0.00 0.02 0.00 -0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.00 0.03 -0.00 -0.00 0.01 0.04 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 2574 2426 2572 2515 2399 2767 2424 2360 2467 2430 2788 2518 2475 2487 2569 3085 2575 2148 2461 726 116 9088 394 351 6 7582 9 8310 340 1757 1541 2294 2485 2984 2472 2753 2504 2439 2299 2370 2640 2597 2457 2432 2569 2724 2732 2781 2745 2679 ]
C [ 1840 2088 1911 2138 2197 1902 2175 1921 1897 2158 1920 2151 1799 2076 2277 1840 1817 2007 1478 77 50 8 1415 50 1 9 9095 15 1160 2878 2352 2128 1938 1718 1737 1831 2062 1919 2386 2153 1922 1970 2180 2009 2041 1956 1932 1827 1841 1844 ]
G [ 2263 2097 2324 2006 2090 2071 2175 2145 2465 2148 2029 2051 2051 2089 2037 2041 2472 2081 1913 286 8920 25 2720 477 9116 1534 5 503 6378 3116 1814 2439 2410 2177 2360 2158 2278 2153 1983 2021 2296 2022 1973 2120 2072 2130 2063 2076 2057 2085 ]
T [ 2462 2528 2332 2480 2453 2399 2365 2713 2310 2403 2402 2419 2814 2487 2256 2173 2275 2903 3287 8050 53 18 4610 8261 16 14 30 311 1261 1388 3432 2278 2306 2260 2570 2397 2295 2628 2471 2595 2281 2550 2529 2578 2457 2329 2412 2455 2496 2531 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.01 -0.00 0.01 0.06 -0.02 -0.01 -0.01 0.05 -0.02 0.03 -0.01 -0.00 -0.01 0.00 0.00 ]
C [ 0.00 0.01 0.00 -0.01 -0.01 -0.04 -0.03 0.01 -0.00 -0.04 -0.05 0.06 -0.03 0.01 0.01 0.02 0.01 0.00 ]
G [ 0.00 0.01 0.01 0.00 -0.02 0.05 -0.02 0.00 -0.02 0.07 0.02 -0.04 0.03 0.03 0.02 0.00 0.01 0.01 ]
T [ 0.00 0.00 0.00 0.01 0.03 -0.01 -0.03 0.03 0.04 -0.00 -0.04 0.01 -0.01 0.00 -0.00 0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 12295

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3840

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2176

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1937

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 707

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 358

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 209

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 170

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 168

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 166

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 157

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 155

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 105

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 72

CWM

PFM

     

HCWM

3 profiles found for the same TF (PKNOX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000846.1 PKNOX1 ENCSR115SMW K562 Homo sapiens MA0782.3
BP000848.1 PKNOX1 ENCSR711XNY GM12878 Homo sapiens MA0782.3
BP000849.1 PKNOX1 ENCSR986XYK MCF-7 Homo sapiens MA0782.3
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