Detailed information of deep learning profile BP000846.1

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This page shows detailed deep learning-derived predictions and motifs for PKNOX1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PKNOX1
Model ID: BP000846.1
Cell line/tissue: K562
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA0782.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55347  
Source: ENCSR115SMW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.05 0.01 -0.00 -0.00 0.04 0.00 0.00 -0.00 0.00 ]
C [ 0.00 -0.00 0.01 0.02 0.00 -0.00 0.00 0.10 -0.00 0.00 0.00 0.07 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.09 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.04 -0.00 0.06 -0.00 -0.00 -0.00 0.08 0.00 -0.00 0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 2592 2555 2570 2562 2510 2540 3024 2771 2935 2416 2893 2627 2965 2494 2633 2617 2339 2338 2305 3283 1614 1442 490 77 39 16 9304 4296 50 53 8676 2869 2942 2413 2380 2404 2553 3246 2581 2563 2564 2421 3184 2641 2615 2721 2680 2461 2785 2693 ]
C [ 2558 2584 2551 2485 2505 2548 2534 2428 2446 2908 2369 2445 2553 2762 2679 3214 2843 3118 2902 2742 3465 6987 764 2 1710 10561 829 3828 58 10307 498 2616 2683 3243 2499 2597 2590 2649 2510 2456 2515 3254 2569 2645 2468 2437 2402 2995 2570 2915 ]
G [ 2219 2225 2118 2312 2367 2658 2445 2755 2352 2237 2738 3151 2317 2743 2161 2108 1985 2390 2840 2722 3123 1486 37 10501 11 2 104 1712 32 68 125 2368 2705 2217 2277 3035 2812 2163 2880 2242 2930 2362 2250 2801 2264 2855 2830 2296 2781 2198 ]
T [ 3224 3229 3354 3234 3211 2847 2590 2639 2860 3032 2593 2370 2758 2594 3120 2654 3426 2747 2546 1846 2391 678 9302 13 8833 14 356 757 10453 165 1294 2740 2263 2720 3437 2557 2638 2535 2622 3332 2584 2556 2590 2506 3246 2580 2681 2841 2457 2787 ]

Hypothetical CWM

   
A [ -0.00 0.01 -0.00 -0.00 -0.02 0.01 -0.03 -0.02 0.05 0.03 -0.03 -0.02 0.04 0.01 0.00 -0.00 0.00 ]
C [ 0.01 0.00 0.02 0.04 0.03 -0.05 0.01 0.10 -0.02 0.01 -0.03 0.07 -0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.02 0.02 0.01 -0.05 0.09 -0.07 -0.06 -0.01 0.02 -0.04 -0.04 -0.00 -0.00 0.01 0.01 0.01 ]
T [ 0.00 -0.01 -0.01 -0.01 0.04 -0.04 0.07 -0.02 -0.02 -0.03 0.08 0.00 -0.01 0.01 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6893

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 5785

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2663

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1250

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 888

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 478

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 462

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 276

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 240

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 238

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 237

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 124

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 99

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 83

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 66

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 58

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_21

Num. of seqlets: 50

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_22

Num. of seqlets: 44

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_24

Num. of seqlets: 37

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_25

Num. of seqlets: 30

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_26

Num. of seqlets: 27

CWM

PFM

     

HCWM

3 profiles found for the same TF (PKNOX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000847.1 PKNOX1 ENCSR233FAG HEK293T Homo sapiens MA0782.3
BP000848.1 PKNOX1 ENCSR711XNY GM12878 Homo sapiens MA0782.3
BP000849.1 PKNOX1 ENCSR986XYK MCF-7 Homo sapiens MA0782.3
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