Detailed information of deep learning profile BP000797.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000797.1
Cell line/tissue: K562
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR582IAO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.00 0.05 0.00 0.02 0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.10 0.11 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.01 -0.00 -0.00 ]
G [ 0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.08 0.09 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.01 0.01 0.00 -0.00 0.00 0.01 0.05 0.00 0.07 0.01 0.02 0.00 -0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1349 945 1065 1077 948 1605 1619 1096 1167 1013 1021 1526 1142 1130 1595 1358 1511 731 429 1339 32 1 1279 308 3039 130 2183 955 523 91 1127 1422 2062 1272 1861 1457 1429 1277 964 937 1172 1057 1390 1158 1021 1395 1352 1102 1012 1178 ]
C [ 1246 1184 1027 1009 1347 951 1003 1420 1234 1094 1532 1119 915 910 1058 1162 984 825 610 869 4518 4484 563 89 121 122 275 102 7 54 1215 1962 484 788 668 856 1045 1019 965 1100 880 862 986 965 1039 1093 1014 1205 1274 1287 ]
G [ 903 1038 1449 1476 1122 951 1006 939 1281 887 1004 909 1582 1511 824 705 1194 372 1152 1090 25 2 85 48 227 13 141 187 4050 4350 982 581 690 860 1188 1218 1048 1301 1348 1541 1434 1315 993 1466 1390 1072 1125 1096 1168 1034 ]
T [ 1093 1424 1050 1029 1174 1084 963 1136 909 1597 1034 1037 952 1040 1114 1366 902 2663 2400 1293 16 104 2664 4146 1204 4326 1992 3347 11 96 1267 626 1355 1671 874 1060 1069 994 1314 1013 1105 1357 1222 1002 1141 1031 1100 1188 1137 1092 ]

Hypothetical CWM

   
A [ 0.02 -0.00 -0.01 0.00 -0.01 -0.08 0.03 0.02 0.06 0.01 0.05 0.03 0.03 -0.03 0.00 0.01 0.02 -0.01 ]
C [ 0.01 0.02 0.00 0.01 0.10 0.11 -0.02 -0.03 -0.05 -0.01 -0.03 -0.01 -0.04 -0.02 0.02 0.03 -0.01 0.00 ]
G [ 0.01 -0.01 0.02 0.02 -0.02 -0.04 -0.00 -0.03 -0.02 -0.05 -0.03 -0.02 0.10 0.09 0.01 0.01 0.01 0.01 ]
T [ -0.01 0.02 0.01 0.01 -0.03 0.03 0.02 0.05 0.02 0.07 0.02 0.03 -0.07 -0.01 0.01 -0.01 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1461

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 343

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 281

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 243

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 115

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages