Detailed information of deep learning profile BP000797.1

  1. Home
  2. Deep Learning Profile > BP000797.1
This page shows detailed deep learning-derived predictions and motifs for SRF in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000797.1
Cell line/tissue: K562
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR582IAO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.02 0.01 0.07 0.00 0.05 0.01 0.00 -0.00 0.00 0.01 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.09 0.08 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 ]
G [ -0.00 -0.00 0.01 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.11 0.10 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.01 0.00 -0.00 -0.00 0.00 0.00 0.02 0.00 0.05 0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1092 1137 1188 1100 1031 1141 1002 1222 1357 1105 1013 1314 994 1069 1060 874 1671 1355 626 1267 96 11 3347 1992 4326 1204 4146 2664 104 16 1293 2400 2663 902 1366 1114 1040 952 1037 1034 1597 909 1136 963 1084 1174 1029 1050 1424 1093 ]
C [ 1034 1168 1096 1125 1072 1390 1466 993 1315 1434 1541 1348 1301 1048 1218 1188 860 690 581 982 4350 4050 187 141 13 227 48 85 2 25 1090 1152 372 1194 705 824 1511 1582 909 1004 887 1281 939 1006 951 1122 1476 1449 1038 903 ]
G [ 1287 1274 1205 1014 1093 1039 965 986 862 880 1100 965 1019 1045 856 668 788 484 1962 1215 54 7 102 275 122 121 89 563 4484 4518 869 610 825 984 1162 1058 910 915 1119 1532 1094 1234 1420 1003 951 1347 1009 1027 1184 1246 ]
T [ 1178 1012 1102 1352 1395 1021 1158 1390 1057 1172 937 964 1277 1429 1457 1861 1272 2062 1422 1127 91 523 955 2183 130 3039 308 1279 1 32 1339 429 731 1511 1358 1595 1130 1142 1526 1021 1013 1167 1096 1619 1605 948 1077 1065 945 1349 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.01 0.01 -0.01 -0.07 0.03 0.02 0.07 0.02 0.05 0.02 0.03 -0.03 0.01 0.01 0.02 -0.01 ]
C [ 0.01 0.01 0.01 0.01 0.09 0.10 -0.02 -0.03 -0.05 -0.02 -0.03 -0.00 -0.04 -0.02 0.02 0.02 -0.01 0.01 ]
G [ 0.00 -0.01 0.03 0.02 -0.02 -0.04 -0.01 -0.03 -0.01 -0.05 -0.03 -0.02 0.11 0.10 0.01 0.00 0.02 0.01 ]
T [ -0.01 0.02 0.01 0.00 -0.03 0.03 0.03 0.05 0.01 0.06 0.02 0.03 -0.08 -0.01 0.00 -0.01 -0.00 0.02 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1461

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 343

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 281

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 243

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 115

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages