Detailed information of deep learning profile BP000796.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000796.1
Cell line/tissue: HepG2
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR516SMM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 -0.00 0.00 0.01 0.01 0.03 0.00 0.03 0.01 0.00 -0.00 0.00 0.00 0.01 -0.00 ]
C [ 0.00 -0.00 0.00 -0.00 0.04 0.05 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 ]
G [ -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.05 0.05 -0.00 0.00 -0.00 0.00 ]
T [ 0.00 0.01 0.00 0.00 -0.00 0.00 0.00 0.01 0.00 0.02 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 472 481 457 513 512 464 468 474 561 480 481 534 492 498 467 454 691 457 293 429 95 2 1283 938 1835 764 1798 1106 121 13 640 924 924 487 478 485 507 510 437 486 486 436 486 436 474 498 479 478 516 510 ]
C [ 504 549 555 518 489 560 528 498 488 527 557 498 516 530 609 608 482 361 343 439 1761 1742 130 83 21 157 37 67 5 10 617 515 263 323 382 380 531 514 435 453 441 522 472 486 456 515 519 528 554 516 ]
G [ 540 482 470 471 472 491 451 516 449 437 465 481 493 471 401 367 358 258 623 523 48 11 97 121 42 47 19 131 1818 1896 357 297 378 606 645 610 473 447 573 521 555 530 494 520 492 487 503 503 507 507 ]
T [ 433 437 467 447 476 434 502 461 451 505 446 436 448 450 472 520 418 873 690 558 45 194 439 807 51 981 95 645 5 30 335 213 384 533 444 474 438 478 504 489 467 461 497 507 527 449 448 440 372 416 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 0.00 -0.00 -0.04 0.02 0.02 0.04 0.01 0.03 0.01 0.01 -0.01 0.00 0.01 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.04 0.05 -0.01 -0.02 -0.02 -0.00 -0.02 -0.00 -0.02 -0.01 0.01 0.01 -0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.01 -0.02 -0.00 -0.02 -0.01 -0.03 -0.02 -0.01 0.05 0.05 -0.00 -0.00 0.00 0.01 ]
T [ -0.00 0.01 0.01 0.00 -0.01 0.01 0.01 0.03 0.01 0.03 0.01 0.02 -0.04 -0.01 0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1611

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1331

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 459

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 358

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 313

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 297

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 262

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 253

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 231

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 60

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 30

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages