Detailed information of deep learning profile BP000794.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000794.1
Cell line/tissue: GM12878
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR041XML
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 0.00 -0.00 0.00 -0.00 -0.00 0.02 0.01 0.05 0.00 0.03 0.01 0.00 -0.00 -0.00 0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.05 0.06 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 ]
G [ -0.00 -0.00 0.01 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 0.06 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.01 0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 0.03 0.00 0.01 -0.00 -0.00 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 3530 3576 3623 3553 3607 3490 3392 3607 3975 3533 3432 4105 3555 3587 3479 3162 5252 3513 2379 3376 495 57 8911 6494 11999 4265 11079 7125 880 151 3312 5880 6979 2912 3983 3462 3232 3329 3396 3680 4001 3151 3317 3242 3474 3767 3469 3368 3649 3675 ]
C [ 2719 3179 2968 3045 2766 3168 3235 2797 3012 3257 3458 3008 3186 2863 3176 3289 2460 2067 1810 2908 11621 11099 803 623 79 1021 286 288 6 142 3652 3659 1239 2748 2208 2496 3650 3489 2508 2770 2569 3166 2690 2834 2652 2923 3262 3375 2995 2689 ]
G [ 3002 2934 2781 2702 2890 2910 2620 2767 2631 2497 2785 2568 2622 2983 2553 2108 2161 1495 4618 3442 262 31 354 696 299 793 375 1061 11927 12320 2592 1620 2113 2506 3003 2992 2647 2841 2994 3368 3007 3118 3304 2873 2611 3019 2787 2832 3043 3034 ]
T [ 3576 3138 3455 3527 3564 3259 3580 3656 3209 3540 3152 3146 3464 3394 3619 4268 2954 5752 4020 3101 449 1640 2759 5014 450 6748 1087 4353 14 214 3271 1668 2496 4661 3633 3877 3298 3168 3929 3009 3250 3392 3516 3878 4090 3118 3309 3252 3140 3429 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.00 0.01 -0.01 -0.04 0.02 0.02 0.05 0.02 0.04 0.02 0.02 -0.02 -0.00 0.01 0.02 -0.00 ]
C [ 0.00 0.01 0.00 0.01 0.06 0.07 -0.01 -0.02 -0.03 -0.02 -0.03 -0.01 -0.04 -0.01 0.01 0.01 -0.01 0.00 ]
G [ 0.00 -0.01 0.02 0.01 -0.01 -0.04 -0.01 -0.03 -0.02 -0.03 -0.02 -0.02 0.07 0.06 0.01 0.00 0.01 0.00 ]
T [ -0.00 0.01 0.01 -0.00 -0.01 0.02 0.02 0.04 0.01 0.04 0.02 0.02 -0.05 -0.01 0.01 -0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4326

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 203

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 22

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages