Detailed information of deep learning profile BP000792.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000792.1
Cell line/tissue: Ishikawa
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BTD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.01 0.05 0.00 0.04 0.01 0.00 -0.00 0.00 0.01 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.08 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 ]
G [ -0.00 -0.00 0.01 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.10 0.09 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.01 0.00 -0.00 -0.00 0.00 0.00 0.02 0.00 0.03 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1392 1469 1461 1474 1505 1420 1377 1526 1694 1387 1397 1707 1481 1530 1408 1162 2253 1227 833 1269 115 7 3937 2814 5201 1812 5027 3393 207 34 1829 2972 3121 1464 1675 1425 1364 1312 1345 1426 1648 1288 1368 1252 1449 1548 1380 1389 1461 1531 ]
C [ 1365 1494 1463 1446 1317 1572 1529 1367 1443 1528 1686 1439 1505 1425 1644 1693 1134 975 781 1335 5340 4952 254 193 41 361 115 141 5 33 1672 1412 502 1160 986 1116 1624 1569 1133 1348 1222 1452 1277 1318 1297 1395 1484 1532 1448 1324 ]
G [ 1494 1385 1292 1355 1333 1399 1206 1341 1159 1186 1321 1183 1306 1281 1086 912 948 563 1944 1360 62 9 139 208 188 192 87 317 5432 5522 910 633 1017 1247 1581 1527 1243 1265 1523 1544 1517 1551 1571 1525 1246 1377 1368 1401 1477 1430 ]
T [ 1394 1297 1429 1370 1490 1254 1533 1411 1349 1544 1241 1316 1353 1409 1507 1878 1310 2880 2087 1681 128 677 1315 2430 215 3280 416 1794 1 56 1234 628 1005 1774 1403 1577 1414 1499 1644 1327 1258 1354 1429 1550 1653 1325 1413 1323 1259 1360 ]

Hypothetical CWM

   
A [ 0.01 -0.00 -0.01 0.01 -0.01 -0.07 0.03 0.03 0.05 0.02 0.05 0.02 0.02 -0.03 0.01 0.02 0.02 -0.00 ]
C [ 0.01 0.01 0.00 0.01 0.08 0.10 -0.02 -0.03 -0.03 -0.01 -0.03 -0.00 -0.04 -0.02 0.02 0.02 -0.01 0.00 ]
G [ 0.00 -0.00 0.02 0.02 -0.02 -0.04 -0.00 -0.04 -0.01 -0.03 -0.03 -0.02 0.10 0.09 0.01 0.00 0.01 0.01 ]
T [ -0.00 0.02 0.01 0.00 -0.03 0.03 0.02 0.05 0.01 0.05 0.03 0.03 -0.07 -0.01 0.00 -0.01 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 867

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 767

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 552

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 173

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 148

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages